Browse Element(s) Details


Os.2404.1.S1_at

Description gb:AF261274.1
DB_XREF= gi:8118429
GEN=EXPB6
TID=Os.2404.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.2404 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-expansin (EXPB6) mRNA, complete cds.
PROD=beta-expansin
FL= gb:AK105799.1 gb:AF261274.1 gb:AK101728.1 gb:AK061498.1 gb:AK104197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4070011/11Beta-expansin 1a precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40660Os.54858.1.S1_at11/1110+21479586..21481267Zinc finger, C2H2 type family protein, expressed
LOC_Os10g40680NANA10+21492586..21494013expressed protein
LOC_Os10g40700Os.2404.1.S1_at11/1110+21500469..21502007Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40710Os.2373.1.S1_at11/1110+21506246..21507957Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40710OsAffx.22529.1.S1_s_at1/1110+21506246..21507957Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40720Os.6786.1.S1_a_at11/1110+21518134..21520035Beta-expansin 1a precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2404.1.S1_at--126--9411Chr10:21500783..21500807 (25 bp)
TCGTCCAGTTCAGCTAGATCAATCA
LOC_Os10g40700
Os.2404.1.S1_at--90--4871Chr10:21500771..21500795 (25 bp)
GCTAGATCAATCATCCACTGCTGAT
LOC_Os10g40700
Os.2404.1.S1_at--990--411Chr10:21500762..21500786 (25 bp)
ATCATCCACTGCTGATCGAATATGG
LOC_Os10g40700
Os.2404.1.S1_at--1127--5231Chr10:21500738..21500762 (25 bp)
GAATCATATTGGCTCGCGATCGATC
LOC_Os10g40700
Os.2404.1.S1_at--32--10251Chr10:21500671..21500695 (25 bp)
TTTGCGTGGGATTGAGGTGTTTTTT
LOC_Os10g40700
Os.2404.1.S1_at--1019--10431Chr10:21500642..21500666 (25 bp)
TTAGGCGAGGCCTCATGTGCTGTCT
LOC_Os10g40700
Os.2404.1.S1_at--950--8691Chr10:21500627..21500651 (25 bp)
TGTGCTGTCTGGTCTAGTGTGTGAA
LOC_Os10g40700
Os.2404.1.S1_at--702--9871Chr10:21500555..21500579 (25 bp)
TACAGTATGTGCATGTGCTCTCCCG
LOC_Os10g40700
Os.2404.1.S1_at--821--1951Chr10:21500527..21500551 (25 bp)
ACTGTCACTGTACTACCCAGTGCTT
LOC_Os10g40700
Os.2404.1.S1_at--424--6951Chr10:21500518..21500542 (25 bp)
GTACTACCCAGTGCTTTGTAACCAA
LOC_Os10g40700
Os.2404.1.S1_at--345--7051Chr10:21500501..21500525 (25 bp)
GTAACCAAATCTTAAGGCTACAGAA
LOC_Os10g40700
Target Sequence 
TCGTCCAGTTCAGCTAGATCAATCATCCACTGCTGATCGAATATGGAATCATATTGGCTCGCGATCGATCGATCGATCGA
TTAGTTTATTCTCTACTACTGCTGCTGCAAAATTTGCGTGGGATTGAGGTGTTTTTTTTTTTATTAGGCGAGGCCTCATG
TGCTGTCTGGTCTAGTGTGTGAAGTGGTGAAGTGATGCATGTGTGGGAAAATGGAGGAGGGGCACAGTAATACAGTATGT
GCATGTGCTCTCCCGCCCACTGTCACTGTACTACCCAGTGCTTTGTAACCAAATCTTAAGGCTACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis