Browse Element(s) Details


Os.24040.1.S1_at

Description gb:AK100556.1
DB_XREF= gi:32985765
TID=Os.24040.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104B14, full insert sequence.
FL= gb:AK100556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3663011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36600Os.8760.1.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36600Os.8760.2.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36610Os.46012.2.S1_x_at8/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.27088.1.A1_x_at6/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.46012.3.S1_x_at4/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36620Os.7587.2.A1_at11/119+21132310..21133869expressed protein
LOC_Os09g36630Os.24040.1.S1_at11/119+21134009..21136312expressed protein
LOC_Os09g36640OsAffx.30156.1.S1_at11/119+21141767..21142906hypothetical protein
LOC_Os09g36650OsAffx.18014.1.S1_at11/119+21145536..21148594expressed protein
LOC_Os09g36660NANA9+21149216..21150900expressed protein
LOC_Os09g36670Os.49083.1.S1_x_at11/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36670Os.16549.2.S1_at1/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36680Os.9417.1.S1_at11/119+21155477..21157464Ribonuclease T2 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24040.1.S1_at--831--1271Chr09:21135753..21135777 (25 bp)
AGATCCCTCTCACAATAAAGTCTCC
LOC_Os09g36630
Os.24040.1.S1_at--925--9831Chr09:21135768..21135792 (25 bp)
TAAAGTCTCCCATCACTGTCGCTAT
LOC_Os09g36630
Os.24040.1.S1_at--650--7231Chr09:21135785..21135809 (25 bp)
GTCGCTATCATGTTCTCGATTGGCA
LOC_Os09g36630
Os.24040.1.S1_at--482--4971Chr09:21135807..21135831 (25 bp)
GCATCATGATCTTGTTCTCCGGCTT
LOC_Os09g36630
Os.24040.1.S1_at--728--10811Chr09:21135834..21135858 (25 bp)
TTGTCCCCAAGATGCCCAAATCGTT
LOC_Os09g36630
Os.24040.1.S1_at--753--3171Chr09:21135883..21135907 (25 bp)
AATTGTCATCTGCTTTGCGGCCGTG
LOC_Os09g36630
Os.24040.1.S1_at--128--8431Chr09:21135901..21135925 (25 bp)
GGCCGTGCTCAGCTACGATAATGAA
LOC_Os09g36630
Os.24040.1.S1_at--218--3011Chr09:21135920..21135944 (25 bp)
AATGAAAGCTCGAAGACCACTGCCC
LOC_Os09g36630
Os.24040.1.S1_at--829--6691Chr09:21136016..21136040 (25 bp)
GTTCCATCCCTGTGTAATCTATTGT
LOC_Os09g36630
Os.24040.1.S1_at--859--5331Chr09:21136100..21136124 (25 bp)
GAAGTCATCTGAGAACTCGTTCCAT
LOC_Os09g36630
Os.24040.1.S1_at--1113--4711Chr09:21136197..21136221 (25 bp)
GCTGTTTACAGTCTTGTGCTTGAAA
LOC_Os09g36630
Target Sequence 
AGATCCCTCTCACAATAAAGTCTCCCATCACTGTCGCTATCATGTTCTCGATTGGCATCATGATCTTGTTCTCCGGCTTC
CTTGTCCCCAAGATGCCCAAATCGTTGAAGATCATGTGTTGGGCGNCTTCAATTGTCATCTGCTTTGCGGCCGTGCTCAG
CTACGATAATGAAAGCTCGAAGACCACTGCCCCAACTGAAATGCATGATCTGGAAAATCCTCCAAGTATTTAATACTGAA
TAATGCCATTTAACTGGCATACAGTTCCATCCCTGTGTAATCTATTGTTAGATAGGAAATAGTGCTATTTAACNGATCGG
TTAGTAATAAGAACTTGTTAGTAATAAGAAGTCATCTGAGAACTCGTTCCATCCCTATGTGGAAANACAAGTTCTTTTTT
ATTTGGAAGGTAAACAAGTTCTTTGTTCTAGTGCTTTAAGTCTAGCTGTTTACAGTCTTGTGCTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis