Browse Element(s) Details


OsAffx.30156.1.S1_at

Description tigr:9637.m03090
TID=OsAffx.30156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3664011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36610Os.46012.2.S1_x_at8/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.27088.1.A1_x_at6/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.46012.3.S1_x_at4/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36620Os.7587.2.A1_at11/119+21132310..21133869expressed protein
LOC_Os09g36630Os.24040.1.S1_at11/119+21134009..21136312expressed protein
LOC_Os09g36640OsAffx.30156.1.S1_at11/119+21141767..21142906hypothetical protein
LOC_Os09g36650OsAffx.18014.1.S1_at11/119+21145536..21148594expressed protein
LOC_Os09g36660NANA9+21149216..21150900expressed protein
LOC_Os09g36670Os.49083.1.S1_x_at11/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36670Os.16549.2.S1_at1/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36680Os.9417.1.S1_at11/119+21155477..21157464Ribonuclease T2 family protein, expressed
LOC_Os09g36690Os.52946.1.S1_at4/119+21161762..21162475hypothetical protein
LOC_Os09g36690OsAffx.13417.1.S1_x_at2/119+21161762..21162475hypothetical protein
LOC_Os09g36700Os.12922.1.S1_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36700Os.47388.1.S1_s_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30156.1.S1_at--758--4311Chr09:21142236..21142260 (25 bp)
CCTTCCATTCCATTGATGTCTTCTA
LOC_Os09g36640
OsAffx.30156.1.S1_at--521--10671Chr09:21142234..21142258 (25 bp)
TTCCATTCCATTGATGTCTTCTACC
LOC_Os09g36640
OsAffx.30156.1.S1_at--548--91Chr09:21142230..21142254 (25 bp)
ATTCCATTGATGTCTTCTACCTACG
LOC_Os09g36640
OsAffx.30156.1.S1_at--220--5971Chr09:21142190..21142214 (25 bp)
GAGAAGCGGGACACGCCGTCAATAC
LOC_Os09g36640
OsAffx.30156.1.S1_at--355--1451Chr09:21142189..21142213 (25 bp)
AGAAGCGGGACACGCCGTCAATACG
LOC_Os09g36640
OsAffx.30156.1.S1_at--883--8131Chr09:21142182..21142206 (25 bp)
GGACACGCCGTCAATACGGCGCCGT
LOC_Os09g36640
OsAffx.30156.1.S1_at--438--4472Chr03:26762007..26762031 (25 bp)
GCCTCGACGGCAGCCATCGGTGACG
NONE
OsAffx.30156.1.S1_at--217--4551Chr09:21142068..21142092 (25 bp)
GCCCTCGGCGCGTTGTAGTTCATGA
LOC_Os09g36640
OsAffx.30156.1.S1_at--73--3791Chr09:21142065..21142089 (25 bp)
CTCGGCGCGTTGTAGTTCATGACGG
LOC_Os09g36640
OsAffx.30156.1.S1_at--481--4571Chr09:21142061..21142085 (25 bp)
GCGCGTTGTAGTTCATGACGGCAGT
LOC_Os09g36640
OsAffx.30156.1.S1_at--55--7651Chr09:21142034..21142058 (25 bp)
GGGAGATCTCGCACGGGCGGGCGAC
LOC_Os09g36640
Target Sequence 
CCTTCCATTCCATTGATGTCTTCTACCTACGACCTCTCCCGGGAGGGAGAAGCGGGACACGCCGTCAATACGGCGCCGTC
ATCCTCGATCTCCCCTTCCTCTGCCGCCTCTCCCGGACCGCCTCGACGGCAGCCATCGGTGACGCCGCCGCCGCCGCATC
GGCCCTCGGCCCTCGGCGCGTTGTAGTTCATGACGGCAGTGGGGGAGATCTCGCACGGGCGGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis