Browse Element(s) Details


Os.7587.2.A1_at

Description gb:AK072188.1
DB_XREF= gi:32982211
TID=Os.7587.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146K22, full insert sequence.
FL= gb:AK072188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3662011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36590NANA9+21104147..21107795retrotransposon protein, putative, LINE subclass
LOC_Os09g36600Os.8760.1.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36600Os.8760.2.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36610Os.46012.2.S1_x_at8/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.27088.1.A1_x_at6/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.46012.3.S1_x_at4/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36620Os.7587.2.A1_at11/119+21132310..21133869expressed protein
LOC_Os09g36630Os.24040.1.S1_at11/119+21134009..21136312expressed protein
LOC_Os09g36640OsAffx.30156.1.S1_at11/119+21141767..21142906hypothetical protein
LOC_Os09g36650OsAffx.18014.1.S1_at11/119+21145536..21148594expressed protein
LOC_Os09g36660NANA9+21149216..21150900expressed protein
LOC_Os09g36670Os.49083.1.S1_x_at11/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36670Os.16549.2.S1_at1/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36680Os.9417.1.S1_at11/119+21155477..21157464Ribonuclease T2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7587.2.A1_at--345--5551Chr09:21133329..21133353 (25 bp)
GAAACGACGGCCGACATGCAACGAA
LOC_Os09g36620
Os.7587.2.A1_at--285--2571Chr09:21133353..21133377 (25 bp)
AACGGAGCGGCCAAGATACACTACG
LOC_Os09g36620
Os.7587.2.A1_at--269--8311Chr09:21133393..21133417 (25 bp)
GGCTAGCTTCTGATCTGGCCACTGC
LOC_Os09g36620
Os.7587.2.A1_at--312--1493Chr09:21133432..21133456 (25 bp)
AGCACACGCTCTCGTGAAACCCTAG
LOC_Os09g36620
Os.7587.2.A1_at--932--7991Chr09:21133553..21133577 (25 bp)
GGATGTGCGCACTGGTATTCAATGC
LOC_Os09g36620
Os.7587.2.A1_at--1128--3551Chr09:21133589..21133613 (25 bp)
CATCATCCGGTGTCATTGCTCTGTG
LOC_Os09g36620
Os.7587.2.A1_at--804--9571Chr09:21133601..21133625 (25 bp)
TCATTGCTCTGTGCGCGGGAATAAC
LOC_Os09g36620
Os.7587.2.A1_at--728--4131Chr09:21133649..21133673 (25 bp)
CGCTCGAGGCGGTGTTACTGCGAAA
LOC_Os09g36620
Os.7587.2.A1_at--373--7411Chr09:21133710..21133734 (25 bp)
GTGATTTCACCGCTACACAGAGGGT
LOC_Os09g36620
Os.7587.2.A1_at--1107--8751Chr09:21133759..21133783 (25 bp)
TGTAGGATTGCTAGTCACAACTTCT
LOC_Os09g36620
Os.7587.2.A1_at--1155--191Chr09:21133825..21133849 (25 bp)
ATTTGCCACGCTTCATAATACATGT
LOC_Os09g36620
Target Sequence 
GAAACGACGGCCGACATGCAACGAAACGGAGCGGCCAAGATACACTACGAACTCCACCACGGCCGGCTAGCTTCTGATCT
GGCCACTGCCACGACGCCACACCAGCACACGCTCTCGTGAAACCCTAGGCCCCTCTCCCGCAGGTGTGGCCTTCCCCGAC
ACCGAGCCTTCACGCGACGGCGGAAGAGATGACCGGCGGNCTGCGGCCACTACTTATTAGGGGAGGATGTGCGCACTGGT
ATTCAATGCGCGAGGAGGCGCATCATCCGGTGTCATTGCTCTGTGCGCGGGAATAACGCGGCAAGCGGTGGCGGGGATAG
CGCTCGAGGCGGTGTTACTGCGAAAGGGGTTCTCGCGCTCGCCCGGTGGGATGAGGAATCGGTGATTTCACCGCTACACA
GAGGGTGGGGACATGGGGATTGATTTCACCTGTAGGATTGCTAGTCACAACTTCTCCTTTTTATATTAGTATAGATAGAC
CATAAAACCTGTGATTATTTGCCACGCTTCATAATACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7587.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis