Browse Element(s) Details


Os.24044.1.S1_at

Description gb:AK106450.1
DB_XREF= gi:32991659
TID=Os.24044.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E11, full insert sequence.
FL= gb:AK106450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g509409/11Cytochrome c oxidase assembly protein ctaG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50890Os.3420.1.S1_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50890Os.3420.1.S1_s_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50900Os.51810.1.S1_at11/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50900Os.19803.2.S1_at1/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50920OsAffx.13451.1.S1_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50920OsAffx.13451.1.S1_x_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50940Os.24044.1.S1_at9/113+29051234..29054086Cytochrome c oxidase assembly protein ctaG, putative, expressed
LOC_Os03g50960OsAffx.3569.1.S1_at11/113+29060906..29061504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g50960OsAffx.3569.1.S1_x_at11/113+29060906..29061504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g50970Os.12990.1.S1_x_at11/113+29065222..29070465retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g50980Os.19367.1.S1_at11/113+29077376..29085535Sumoylation ligase E3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24044.1.S1_at--1131--611Chr03:29052405..29052429 (25 bp)
ATGCTGACGTTGCTGATGGAATGCC
LOC_Os03g50940
Os.24044.1.S1_at--652--1132Chr03:30999373..30999668 (25 bp)
AGTGCTCTTGCATTTTATACTGCTG
NONE
Os.24044.1.S1_at--359--6951Chr03:29052226..29052250 (25 bp)
GTAGTTCAGCTCCAATAACTGGTGT
LOC_Os03g50940
Os.24044.1.S1_at--853--7431NONE
GTGTATCCACACATAACGTAGCTCC
NONE
Os.24044.1.S1_at--1117--2571NONE
AACGTAGCTCCTATGAAGGCTGCAA
NONE
Os.24044.1.S1_at--672--8871Chr03:29051623..29051647 (25 bp)
TGAGGAGCAAACACTTCTTCCAGGG
LOC_Os03g50940
Os.24044.1.S1_at--160--1531Chr03:29051500..29051621 (25 bp)
AGCAGATTGACATGCCGGTGTTCTT
LOC_Os03g50940
Os.24044.1.S1_at--971--3971Chr03:29051485..29051508 (24 bp)
CGGTGTTCTTCTACATCGATCCTGA
LOC_Os03g50940
Os.24044.1.S1_at--952--6331Chr03:29051468..29051492 (25 bp)
GATCCTGAGTTTGAGACAGACCCCA
LOC_Os03g50940
Os.24044.1.S1_at--1151--31Chr03:29051423..29051447 (25 bp)
ATTGTCCTTTCTTACACATTCTTTA
LOC_Os03g50940
Os.24044.1.S1_at--1075--3671Chr03:29051344..29051368 (25 bp)
CTATTTAAACACCTTGCCAACGAGT
LOC_Os03g50940
Target Sequence 
ATGCTGACGTTGCTGATGGAATGCCGTGGAAATTCATTCCAACACAGAGAGAAGTGAAGGTTAAACCTGGTGAAAGTGCT
CTTGCATTTTATACTGCTGAAAATCGTAGTTCAGCTCCAATAACTGGTGTATCCACACATAACGTAGCTCCTATGAAGGC
TGCAATATATTTCAATAAGATACAATGTTTTTGCTTTGAGGAGCAAACACTTCTTCCAGGGGAGCAGATTGACATGCCGG
TGTTCTTCTACATCGATCCTGAGTTTGAGACAGACCCCAAAATGGAAGGGGTGAACAATATTGTCCTTTCTTACACATTC
TTTAAGGTGAACGACAGTTAATTGTATCGGTACCGTAAAGTAAGTGGTAACATTAGNTCTATTTAAACACCTTGCCAACG
AGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis