Browse Element(s) Details


Os.24046.1.S1_at

Description gb:AK111837.1
DB_XREF= gi:37988500
TID=Os.24046.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139G05, full insert sequence.
FL= gb:AK111837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4170010/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41670Os.54687.1.S1_at11/1112+25757103..25762761expressed protein
LOC_Os12g41680Os.53228.1.S1_at11/1112+25767338..25772900salicylic acid-induced protein 19, putative, expressed
LOC_Os12g41690Os.24249.1.A1_at11/1112+25774023..25779025plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g41700Os.24046.1.S1_at10/1112+25781671..25785255zinc finger protein, putative, expressed
LOC_Os12g41710Os.5238.1.S1_at11/1112+25787234..25791093receptor-like serine/threonine kinase, putative, expressed
LOC_Os12g41720OsAffx.32140.1.S1_x_at11/1112+25805168..25806864Patatin-like phospholipase family protein, expressed
LOC_Os12g41720OsAffx.32140.1.S1_at11/1112+25805168..25806864Patatin-like phospholipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0008219biological_processcell death
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24046.1.S1_at--817--8511Chr12:25782448..25782472 (25 bp)
TGGAACTTCATATACTGCCCCATCA
LOC_Os12g41700
Os.24046.1.S1_at--516--3811Chr12:25782322..25782344 (23 bp)
CTCCAACCACTCAATCACAGAATGT
LOC_Os12g41700
Os.24046.1.S1_at--148--8511Chr12:25782088..25782112 (25 bp)
TGGCACACAGTGCACCTTGTTTTAT
LOC_Os12g41700
Os.24046.1.S1_at--402--8251Chr12:25781979..25782003 (25 bp)
GGCACTCGCAATGTGCACAATTACA
LOC_Os12g41700
Os.24046.1.S1_at--943--1231Chr12:25781917..25781941 (25 bp)
AGATACTGTAGTTTGTTACCCCTGA
LOC_Os12g41700
Os.24046.1.S1_at--339--6011Chr12:25781874..25781898 (25 bp)
GAGAGCTCTGTTGGATTTTATTGTG
LOC_Os12g41700
Os.24046.1.S1_at--1058--411Chr12:25781842..25781866 (25 bp)
ATCATCTCCAGATGGCACTAGCTGC
LOC_Os12g41700
Os.24046.1.S1_at--103--3511Chr12:25781736..25781760 (25 bp)
CATGGTTTTACTACTATTTCTGGAA
LOC_Os12g41700
Os.24046.1.S1_at--711--8171Chr12:25781715..25781739 (25 bp)
GGAACTAGACTGAGCATGCCATCTC
LOC_Os12g41700
Os.24046.1.S1_at--608--591Chr12:25781700..25781724 (25 bp)
ATGCCATCTCATCGTTCATGTGTTA
LOC_Os12g41700
Os.24046.1.S1_at--318--10191Chr12:25781671..25781694 (24 bp)
TATTTGCATATTGTTTCTGTAAGCC
NONE
Target Sequence 
TGGAACTTCATATACTGCCCCATCAACCTCTGCTCCAACCACTCAATCACAGAATGTTACTGTTGTTGTTGAAAATCCTA
TGACGGTAGATGCAAAGGGAAAGTTGGTGAGCAACGTTGTAGTTGGGGTTACAACTGGTGGTAAAAAGTAACATATTGGC
ACACAGTGCACCTTGTTTTATGTTCCATATATGGAGTTGGAAATACTTTGTATTATACACAAATGTTTGTGATCAATTGC
TGGAAGGAACCCTGAAGAGCATAGGGGCACTCGCAATGTGCACAATTACAATCAAGCTAAAAAAACAAACTGCAGGTGTG
AATACTGAGATACTGTAGTTTGTTACCCCTGATTCTTTTGTATGTAATATGAGAGCTCTGTTGGATTTTATTGTGTGATC
AAATCATCTCCAGATGGCACTAGCTGCCNTCTCAATGAATAATAACAGATTGCGTTCAACATAGCGCATGTTTTGTATAC
AACCTGAATGAGCTGATTTNGTNAAATGCATGGTTTTACTACTATTTCTGGAACTAGACTGAGCATGCCATCTCATCGTT
CATGTGTTAAAATTTATTTGCATATTGTTTCTGTAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis