Browse Element(s) Details


Os.2405.1.S1_at

Description gb:AF261278.1
DB_XREF= gi:8118438
GEN=EXPB10
TID=Os.2405.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2405 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-expansin (EXPB10) mRNA, complete cds.
PROD=beta-expansin
FL= gb:AF261278.1 gb:AK069853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0164011/11Major pollen allergen Ory s 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01590Os.49756.1.S1_at11/113+348670..353035PAIR1 protein, putative, expressed
LOC_Os03g01600Os.30547.1.S1_at11/113+353623..358138Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os03g01610Os.2402.1.S1_at11/113+365220..366444Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01620NANA3+368102..368392hypothetical protein
LOC_Os03g01630Os.2402.1.S1_at3/113+369916..370719Major pollen allergen Ory s 1 precursor, putative
LOC_Os03g01640Os.2405.1.S1_at11/113+375686..376785Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01650Os.2402.1.S1_at11/113+379438..380626Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01660Os.43902.1.S1_at11/113+384055..388497Skp1 family, dimerisation domain containing protein, expressed
LOC_Os03g01670Os.28346.5.S1_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_x_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.5.S1_x_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01684Os.28346.5.S1_at11/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.5.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.2.S1_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.3.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.4.S1_x_at9/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_x_at6/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_at2/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.49292.2.S1_x_at1/113+395061..406955retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2405.1.S1_at--909--471Chr03:376176..376200 (25 bp)
ATCGATATGCAGTTTCGTCGCGTCC
LOC_Os03g01640
Os.2405.1.S1_at--511--7251Chr03:376197..376221 (25 bp)
GTCCGCTGCAAGTACCCTGGTGAGA
LOC_Os03g01640
Os.2405.1.S1_at--997--2611Chr03:376254..376278 (25 bp)
AACCCCAACTACTTTGCAGTGCTTG
LOC_Os03g01640
Os.2405.1.S1_at--677--1111Chr03:376271..376295 (25 bp)
AGTGCTTGTCAAGTACGTCGGTGGT
LOC_Os03g01640
Os.2405.1.S1_at--614--1151Chr03:376435..376459 (25 bp)
AGTCTGACCAGAAGCTTGTCGCCAA
LOC_Os03g01640
Os.2405.1.S1_at--1055--10831Chr03:376478..376502 (25 bp)
TTGGAAGGCCAACGCTCTCTACAAA
LOC_Os03g01640
Os.2405.1.S1_at--125--6371Chr03:376508..376532 (25 bp)
GATCCAAGTCGACTAAGCCTGCATG
LOC_Os03g01640
Os.2405.1.S1_at--269--8511Chr03:376531..376555 (25 bp)
TGGAATTCTTCCGTTGTCTAGCTAC
LOC_Os03g01640
Os.2405.1.S1_at--965--6631Chr03:376543..376567 (25 bp)
GTTGTCTAGCTACCTATGCACACAG
LOC_Os03g01640
Os.2405.1.S1_at--310--2851Chr03:376629..376653 (25 bp)
AAGTCTATCGGTCTATGGTGTCTGC
LOC_Os03g01640
Os.2405.1.S1_at--866--8651Chr03:376663..376687 (25 bp)
TGGGCCCATGATCGAGTCTTCAATT
LOC_Os03g01640
Target Sequence 
ATCGATATGCAGTTTCGTCGCGTCCGCTGCAAGTACCCTGGTGAGACTAAGGTCACCTTCCACGTTGAGAAGGGCTCCAA
CCCCAACTACTTTGCAGTGCTTGTCAAGTACGTCGGTGGTGACGGTGATGTCGTGAAGGTGGAACTTAAGGAGAAAGGCT
CTGAGGAGTGGAAGCCACTCAACGAGTCATGGGGTGCTATCTGGAGGATAGACACTCCCAAGCCACTCAAGGGCCCCTTC
TCCCTCCGTGTCACCACCGAGTCTGACCAGAAGCTTGTCGCCAACGACGTCATCCCCGATAATTGGAAGGCCAACGCTCT
CTACAAATCAGAGATCCAAGTCGACTAAGCCTGCATGGAATTCTTCCGTTGTCTAGCTACCTATGCACACAGGGGACGGA
AAAAAATGTATTTTAAATTTAAAAAATAGAGCTAGGTTTGTGGAGTGAGCAGAAAGTCTATCGGTCTATGGTGTCTGCTC
TCCTACCTGGGCCCATGATCGAGTCTTCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis