Browse Element(s) Details


Os.49756.1.S1_at

Description gb:AB158462.1
DB_XREF= gi:46240832
GEN=PAIR1
TID=Os.49756.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49756 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) PAIR1 mRNA for coiled-coil protein, complete cds.
PROD=coiled-coil protein
FL= gb:AB158462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0159011/11PAIR1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01540Os.35561.4.S1_x_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01540Os.35561.3.S1_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01550Os.35561.1.S1_x_at11/113+326776..330635expressed protein
LOC_Os03g01560OsAffx.24936.1.S1_at11/113+334208..334558hypothetical protein
LOC_Os03g01570Os.20075.1.S1_at9/113+335073..338062Uncharacterised protein family containing protein, expressed
LOC_Os03g01580Os.14614.1.A1_at11/113+340048..345359expressed protein
LOC_Os03g01590Os.49756.1.S1_at11/113+348670..353035PAIR1 protein, putative, expressed
LOC_Os03g01600Os.30547.1.S1_at11/113+353623..358138Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os03g01610Os.2402.1.S1_at11/113+365220..366444Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01620NANA3+368102..368392hypothetical protein
LOC_Os03g01630Os.2402.1.S1_at3/113+369916..370719Major pollen allergen Ory s 1 precursor, putative
LOC_Os03g01640Os.2405.1.S1_at11/113+375686..376785Major pollen allergen Ory s 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49756.1.S1_at--347--4891Chr03:349663..349687 (25 bp)
GCTTTCTGCACATTTGGTTTATCCT
LOC_Os03g01590
Os.49756.1.S1_at--965--7871Chr03:349648..349672 (25 bp)
GGTTTATCCTGCAAAGGTGACAGAT
LOC_Os03g01590
Os.49756.1.S1_at--1027--7351Chr03:349632..349656 (25 bp)
GTGACAGATCTGAAGCCAAAGGTGG
LOC_Os03g01590
Os.49756.1.S1_at--459--2331Chr03:349593..349617 (25 bp)
AAAGCAGCTCCACAAAAGCCGTTTG
LOC_Os03g01590
Os.49756.1.S1_at--450--2431Chr03:349580..349604 (25 bp)
AAAAGCCGTTTGCTTCGAGCTACTA
LOC_Os03g01590
Os.49756.1.S1_at--895--10591Chr03:349567..349591 (25 bp)
TTCGAGCTACTACAGGGTGGCACCT
LOC_Os03g01590
Os.49756.1.S1_at--801--2891Chr03:349518..349542 (25 bp)
AAGGTCAATATACAAGTGCCAGCAA
LOC_Os03g01590
Os.49756.1.S1_at--718--6311Chr03:349225..349249 (25 bp)
GATGACAGTGAAGGACGTGCGTCCT
LOC_Os03g01590
Os.49756.1.S1_at--21--4011Chr03:349210..349234 (25 bp)
CGTGCGTCCTGCGTGATTTTGAAGA
LOC_Os03g01590
Os.49756.1.S1_at--998--491Chr03:348793..348817 (25 bp)
ATCGTGCTCGCATCCTAGCTAATTA
LOC_Os03g01590
Os.49756.1.S1_at--1155--811Chr03:348768..348792 (25 bp)
ATGGTAACGCCGCATGCATCGTCAT
LOC_Os03g01590
Target Sequence 
GCTTTCTGCACATTTGGTTTATCCTGCAAAGGTGACAGATCTGAAGCCAAAGGTGGAGCAGGGAAAGGTAAAAGCAGCTC
CACAAAAGCCGTTTGCTTCGAGCTACTACAGGGTGGCACCTAAACAGGAAGAGGTAGCGATTAGAAAGGTCAATATACAA
GTGCCAGCAAAGAAGGCACCAGTCAGCATAATCATCGAGTCGGATGATGACAGTGAAGGACGTGCGTCCTGCGTGATTTT
GAAGACAGAAACAGGTAGCAAGGAGTGGAAAGTGACAAAGCAAGGCACCGAAGAGGGCCTGGAGATCCTGCGGAGGGCGA
GGAAGAGGAGGAGGAGAGAGATGCAGTCCATCGTGCTCGCATCCTAGCTAATTAATGGTAACGCCGCATGCATCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis