Browse Element(s) Details


OsAffx.24936.1.S1_at

Description tigr:9631.m00060
TID=OsAffx.24936.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0156011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed
LOC_Os03g01540Os.35561.4.S1_x_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01540Os.35561.3.S1_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01550Os.35561.1.S1_x_at11/113+326776..330635expressed protein
LOC_Os03g01560OsAffx.24936.1.S1_at11/113+334208..334558hypothetical protein
LOC_Os03g01570Os.20075.1.S1_at9/113+335073..338062Uncharacterised protein family containing protein, expressed
LOC_Os03g01580Os.14614.1.A1_at11/113+340048..345359expressed protein
LOC_Os03g01590Os.49756.1.S1_at11/113+348670..353035PAIR1 protein, putative, expressed
LOC_Os03g01600Os.30547.1.S1_at11/113+353623..358138Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24936.1.S1_at--821--371Chr03:334247..334271 (25 bp)
ATCAAGCTGCCGCTGCTATGGTCTG
LOC_Os03g01560
OsAffx.24936.1.S1_at--85--4231Chr03:334256..334280 (25 bp)
CCGCTGCTATGGTCTGAGGTGGAAT
LOC_Os03g01560
OsAffx.24936.1.S1_at--262--7171Chr03:334267..334291 (25 bp)
GTCTGAGGTGGAATGGAACAACGAT
LOC_Os03g01560
OsAffx.24936.1.S1_at--405--5531Chr03:334292..334316 (25 bp)
GAAAACAAGGTTAGTTGCCAGATCT
LOC_Os03g01560
OsAffx.24936.1.S1_at--876--1231Chr03:334304..334328 (25 bp)
AGTTGCCAGATCTATTGCGCCCTAT
LOC_Os03g01560
OsAffx.24936.1.S1_at--635--3591Chr03:334356..334380 (25 bp)
CTAGATCTGGCCTCGGGTTTGTCGG
LOC_Os03g01560
OsAffx.24936.1.S1_at--621--491Chr03:334360..334384 (25 bp)
ATCTGGCCTCGGGTTTGTCGGATCT
LOC_Os03g01560
OsAffx.24936.1.S1_at--973--6851Chr03:334372..334396 (25 bp)
GTTTGTCGGATCTGGCGAACGACAT
LOC_Os03g01560
OsAffx.24936.1.S1_at--33--2811Chr03:334413..334437 (25 bp)
AAGATGCTCAGGGTGGTAGCTTCAT
LOC_Os03g01560
OsAffx.24936.1.S1_at--174--7851Chr03:334427..334451 (25 bp)
GGTAGCTTCATTAACGACCGCCAGG
LOC_Os03g01560
OsAffx.24936.1.S1_at--927--10491Chr03:334437..334461 (25 bp)
TTAACGACCGCCAGGCCTTGCACGG
LOC_Os03g01560
Target Sequence 
ATCAAGCTGCCGCTGCTATGGTCTGAGGTGGAATGGAACAACGATGAAAACAAGGTTAGTTGCCAGATCTATTGCGCCCT
ATGCCACCATCGCTTCCTCGTCGAGCTCGCTAGATCTGGCCTCGGGTTTGTCGGATCTGGCGAACGACATCGCTTTGGGG
GCAACAAAGATGCTCAGGGTGGTAGCTTCATTAACGACCGCCAGGCCTTGCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis