Browse Element(s) Details


Os.35561.1.S1_x_at

Description gb:AK066875.1
DB_XREF= gi:32976893
TID=Os.35561.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0009C08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082I15, full insert sequence.
FL= gb:AK066875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0155011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01490Os.34626.1.S1_a_at10/113+300759..301988expressed protein
LOC_Os03g01500OsAffx.10059.1.S1_at11/113+303205..304327hypothetical protein
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed
LOC_Os03g01540Os.35561.4.S1_x_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01540Os.35561.3.S1_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01550Os.35561.1.S1_x_at11/113+326776..330635expressed protein
LOC_Os03g01560OsAffx.24936.1.S1_at11/113+334208..334558hypothetical protein
LOC_Os03g01570Os.20075.1.S1_at9/113+335073..338062Uncharacterised protein family containing protein, expressed
LOC_Os03g01580Os.14614.1.A1_at11/113+340048..345359expressed protein
LOC_Os03g01590Os.49756.1.S1_at11/113+348670..353035PAIR1 protein, putative, expressed
LOC_Os03g01600Os.30547.1.S1_at11/113+353623..358138Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35561.1.S1_x_at--600--10411Chr03:327342..327366 (25 bp)
TTATTGGTGCATTTTCACGCGCGGT
LOC_Os03g01550
Os.35561.1.S1_x_at--58--9691Chr03:327328..327352 (25 bp)
TCACGCGCGGTTATCAGCAATGCAA
LOC_Os03g01550
Os.35561.1.S1_x_at--803--191Chr03:327288..327312 (25 bp)
ATTTCTCTGCTGCACTGTTCGGAAG
LOC_Os03g01550
Os.35561.1.S1_x_at--449--8171Chr03:327268..327292 (25 bp)
GGAAGCTTCGACAGCCGTAAGTATT
LOC_Os03g01550
Os.35561.1.S1_x_at--326--2691Chr03:327228..327252 (25 bp)
AAGCTCTACTCCAGTTCACTTAAGA
LOC_Os03g01550
Os.35561.1.S1_x_at--815--1211Chr03:327216..327240 (25 bp)
AGTTCACTTAAGATGCTGCTCGAGG
LOC_Os03g01550
Os.35561.1.S1_x_at--779--1111Chr03:327187..327211 (25 bp)
AGTGAGCCAGCTGATCGAGGCAGTC
LOC_Os03g01550
Os.35561.1.S1_x_at--284--5331Chr03:327131..327155 (25 bp)
GAAGTGAGAAGCCACCCAGACCAGT
LOC_Os03g01550
Os.35561.1.S1_x_at--1050--2191Chr03:327057..327081 (25 bp)
ACAACTGTGTTCTCATGGTCATGGT
LOC_Os03g01550
Os.35561.1.S1_x_at--286--3671Chr03:326924..326948 (25 bp)
CTTATCTCTTTGTAGCTTTTAGCAG
LOC_Os03g01550
Os.35561.1.S1_x_at--1147--2851Chr03:326792..326816 (25 bp)
AAGGGAAACAGCTGGCCACTTGAAA
LOC_Os03g01550
Target Sequence 
TTATTGGTGCATTTTCACGCGCGGTTATCAGCAATGCAAGCCTTCTCAACCTGCATTTCTCTGCTGCACTGTTCGGAAGC
TTCGACAGCCGTAAGTATTGAGAAGGGCAAGCACAAGCTCTACTCCAGTTCACTTAAGATGCTGCTCGAGGAGGAAGTGA
GCCAGCTGATCGAGGCAGTCACGGAAGAAGAGAAGAGGAAAACAAAGAAGAGAAGTGAGAAGCCACCCAGACCAGTTGTG
CTCGACCCACCCTTCTCTCCCATGGGAAGAGTGTAGGTATTGTGAACAACTGTGTTCTCATGGTCATGGTGTGCAACATT
ATGAGTCATATTTGGGTTTCATGTCCATATTTTTTGTTGTGATAAAAGAAGCACTTTTATGCTGTTCATAAAGATGGAAG
GTGCGTGTAGGGTTTTTTCTTATCTCTTTGTAGCTTTTAGCAGATCAGTAGCAAGGCAATATATCATTGTTGAATTGCCA
GATAGAAGGAAGGAATTCTGTAGTTAGTAGTAGAGGGCAATGGCAGGTTCCATGAGAGAGGACATAAATAAAGGGAAACA
GCTGGCCACTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35561.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis