Browse Element(s) Details


Os.14614.1.A1_at

Description gb:AK120128.1
DB_XREF= gi:37989751
TID=Os.14614.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026G14, full insert sequence.
FL= gb:AK120128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0158011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed
LOC_Os03g01540Os.35561.4.S1_x_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01540Os.35561.3.S1_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01550Os.35561.1.S1_x_at11/113+326776..330635expressed protein
LOC_Os03g01560OsAffx.24936.1.S1_at11/113+334208..334558hypothetical protein
LOC_Os03g01570Os.20075.1.S1_at9/113+335073..338062Uncharacterised protein family containing protein, expressed
LOC_Os03g01580Os.14614.1.A1_at11/113+340048..345359expressed protein
LOC_Os03g01590Os.49756.1.S1_at11/113+348670..353035PAIR1 protein, putative, expressed
LOC_Os03g01600Os.30547.1.S1_at11/113+353623..358138Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os03g01610Os.2402.1.S1_at11/113+365220..366444Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01620NANA3+368102..368392hypothetical protein
LOC_Os03g01630Os.2402.1.S1_at3/113+369916..370719Major pollen allergen Ory s 1 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14614.1.A1_at--737--5351Chr03:340569..340593 (25 bp)
GAAGAGGTCGCTAATGATTTGTTGA
LOC_Os03g01580
Os.14614.1.A1_at--1137--4891Chr03:340538..340562 (25 bp)
GCTTCAATTTAGTCACTGCTGGTAT
LOC_Os03g01580
Os.14614.1.A1_at--737--3831Chr03:340523..340547 (25 bp)
CTGCTGGTATTTTTCTCTGCTATTT
LOC_Os03g01580
Os.14614.1.A1_at--740--5651Chr03:340442..340466 (25 bp)
GACAGTAAGCTGTCCGCATGACAGA
LOC_Os03g01580
Os.14614.1.A1_at--1058--1711Chr03:340408..340432 (25 bp)
ACCAGTGGACCAGACAAGTATTGTG
LOC_Os03g01580
Os.14614.1.A1_at--99--6931Chr03:340332..340356 (25 bp)
GTAGGATCTTCCTGACACTGAAAGA
LOC_Os03g01580
Os.14614.1.A1_at--283--9251Chr03:340273..340297 (25 bp)
TCCTCATCCATGCACTGCAGATAGA
LOC_Os03g01580
Os.14614.1.A1_at--880--7031Chr03:340220..340244 (25 bp)
GTACAATATTATGCAGCTGACTAAA
LOC_Os03g01580
Os.14614.1.A1_at--599--10691Chr03:340179..340203 (25 bp)
TTCCAATCCTTGTGTGAATTCTTGT
LOC_Os03g01580
Os.14614.1.A1_at--665--1891Chr03:340099..340123 (25 bp)
ACGTTTTCAGAAAGGCGCGCATGTG
LOC_Os03g01580
Os.14614.1.A1_at--813--4571Chr03:340083..340107 (25 bp)
GCGCATGTGTCCTCTTAGCATATAT
LOC_Os03g01580
Target Sequence 
GAAGAGGTCGCTAATGATTTGTTGATTTGAAGCTTCAATTTAGTCACTGCTGGTATTTTTCTCTGCTATTTGTAGAATGG
ATATAGAATGGGTAGAGTCATGACTCATAAGTAGAAGTTATGTTGATGACAGTAAGCTGTCCGCATGACAGAATCAAGAG
GACCAGTGGACCAGACAAGTATTGTGTGATTTTACTGCTTGTTAGTTTGATTGATACATCTTGGGAGCCTAAGAACAGTA
GGATCTTCCTGACACTGAAAGATGCCAGTGCAGCATAAATGCATAATGCCACAGACTCCTCATCCATGCACTGCAGATAG
ATTTAACAGAGTTGGAAGGTGATAGTTCTGTACAATATTATGCAGCTGACTAAAGAATCTTNATGTTGTCCNTTCCAATC
CTTGTGTGAATTCTTGTTATTGTGTGTATAAGTGTGTAACAGTGTACAGTTGTGTGTGAAAAATCGAAGGATACGTTTTC
AGAAAGGCGCGCATGTGTCCTCTTAGCATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14614.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis