Browse Element(s) Details


Os.20075.1.S1_at

Description gb:AK063343.1
DB_XREF= gi:32973361
TID=Os.20075.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OSJNBa0009C08.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B03, full insert sequence.
FL= gb:AK063343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g015709/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed
LOC_Os03g01540Os.35561.4.S1_x_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01540Os.35561.3.S1_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01550Os.35561.1.S1_x_at11/113+326776..330635expressed protein
LOC_Os03g01560OsAffx.24936.1.S1_at11/113+334208..334558hypothetical protein
LOC_Os03g01570Os.20075.1.S1_at9/113+335073..338062Uncharacterised protein family containing protein, expressed
LOC_Os03g01580Os.14614.1.A1_at11/113+340048..345359expressed protein
LOC_Os03g01590Os.49756.1.S1_at11/113+348670..353035PAIR1 protein, putative, expressed
LOC_Os03g01600Os.30547.1.S1_at11/113+353623..358138Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20075.1.S1_at--656--4871Chr03:335599..335623 (25 bp)
GCTATACTAGTACATGTCATTGCAA
LOC_Os03g01570
Os.20075.1.S1_at--221--2311Chr03:335568..335592 (25 bp)
AAAGGCCTTGTTGGTTCAATATCAA
LOC_Os03g01570
Os.20075.1.S1_at--963--6251Chr03:335529..335553 (25 bp)
GATGGTGTGCATATGTACCCTGGCT
LOC_Os03g01570
Os.20075.1.S1_at--114--9071Chr03:335505..335529 (25 bp)
TGCATATTTGCCATCCCATTCGCAG
LOC_Os03g01570
Os.20075.1.S1_at--1137--10611Chr03:335487..335511 (25 bp)
TTCGCAGGTCCATTTTGGTACATGG
LOC_Os03g01570
Os.20075.1.S1_at--713--6991Chr03:335452..335476 (25 bp)
GTACGAGAGCTAGGATTTCATCATC
LOC_Os03g01570
Os.20075.1.S1_at--471--7711Chr03:335397..335421 (25 bp)
GGTGACCTTACGTAGCCTAGTTTGC
LOC_Os03g01570
Os.20075.1.S1_at--792--1231Chr03:335298..335322 (25 bp)
AGATTTTGACGAGCCGTATCAGCCC
LOC_Os03g01570
Os.20075.1.S1_at--365--4071Chr03:335289..335313 (25 bp)
CGAGCCGTATCAGCCCGTATGTAAA
LOC_Os03g01570
Os.20075.1.S1_at--104--791NONE
ATGGTCCTAAAATATACTTCCTCTG
NONE
Os.20075.1.S1_at--1114--2051NONE
ACTTCCTCTGATTTAGGTTACAAGA
NONE
Target Sequence 
GCTATACTAGTACATGTCATTGCAAAGCAATAAAGGCCTTGTTGGTTCAATATCAAGCAAGGTATAAATCGATGGTGTGC
ATATGTACCCTGGCTGCATATTTGCCATCCCATTCGCAGGTCCATTTTGGTACATGGATGTACTCCAGTACGAGAGCTAG
GATTTCATCATCCAATGTAAAATTGATTAAGCGATCAGATNCGGTGACCTTACGTAGCCTAGTTTGCTGGAGGAAGCATG
CGTGTTACGGATGTAGAGAGATATGGTGAATAGTTCCTAGATGTGTGTATATATGTAGAAAAGATTTTGACGAGCCGTAT
CAGCCCGTATGTAAAGATTTGACATTACGTACTGTTATGTTGTTATTGCCNAACAGAATACAGTAGCTGNTGGAAGGGCT
TTGNCATGAAGAGAGTTGTCGTTTAGTCCNTCNTCTTTNATGGTCCTAAAATATACTTCCTCTGATTTAGGTTACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis