Browse Element(s) Details


Os.45920.1.S1_at

Description gb:CR281284
DB_XREF= gi:44667850
DB_XREF=CR281284
CLONE=p883c05p3
TID=Os.45920.1
CNT=16
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative beta tubulin (OSJNBa0009C08.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0153011/11Tubulin beta-2 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01470Os.43909.1.S1_at11/113+292151..293666expressed protein
LOC_Os03g01480OsAffx.24934.1.S1_at11/113+294441..295900hypothetical protein
LOC_Os03g01490Os.34626.1.S1_a_at10/113+300759..301988expressed protein
LOC_Os03g01500OsAffx.10059.1.S1_at11/113+303205..304327hypothetical protein
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed
LOC_Os03g01540Os.35561.4.S1_x_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01540Os.35561.3.S1_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01550Os.35561.1.S1_x_at11/113+326776..330635expressed protein
LOC_Os03g01560OsAffx.24936.1.S1_at11/113+334208..334558hypothetical protein
LOC_Os03g01570Os.20075.1.S1_at9/113+335073..338062Uncharacterised protein family containing protein, expressed
LOC_Os03g01580Os.14614.1.A1_at11/113+340048..345359expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0009409biological_processresponse to cold
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0045298cellular_componenttubulin
GO:0005198molecular_functionstructural molecule activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45920.1.S1_at--1118--5351Chr03:319828..319852 (25 bp)
GAAGAGGCTGATCTCCAGGACTAAT
LOC_Os03g01530
Os.45920.1.S1_at--918--951Chr03:319844..319868 (25 bp)
AGGACTAATTACTACTCTACTGCAA
LOC_Os03g01530
Os.45920.1.S1_at--876--9911Chr03:319861..319885 (25 bp)
TACTGCAATATCAATGTCCAATCTA
LOC_Os03g01530
Os.45920.1.S1_at--25--9691Chr03:319898..319922 (25 bp)
TCACTTCTTGTGTTGCTTAGGCTAT
LOC_Os03g01530
Os.45920.1.S1_at--220--6671Chr03:319909..319933 (25 bp)
GTTGCTTAGGCTATCTTCTCAAGTG
LOC_Os03g01530
Os.45920.1.S1_at--753--431Chr03:319921..319945 (25 bp)
ATCTTCTCAAGTGTTGTCGTTCTTA
LOC_Os03g01530
Os.45920.1.S1_at--967--3131Chr03:319945..319969 (25 bp)
AATTATTACTCCTAGCTGCTACTCT
LOC_Os03g01530
Os.45920.1.S1_at--669--6291Chr03:320007..320031 (25 bp)
GATGATAGGCACAATACCCTGTTGC
LOC_Os03g01530
Os.45920.1.S1_at--510--8811Chr03:320026..320050 (25 bp)
TGTTGCCTTGTACTCGTAGGAGTAT
LOC_Os03g01530
Os.45920.1.S1_at--1072--8031Chr03:320044..320068 (25 bp)
GGAGTATGTGCTGTTACTGTCTAAC
LOC_Os03g01530
Os.45920.1.S1_at--956--6771Chr03:320056..320080 (25 bp)
GTTACTGTCTAACTGATCTGTATGA
LOC_Os03g01530
Target Sequence 
GAAGAGGCTGATCTCCAGGACTAATTACTACTCTACTGCAATATCAATGTCCAATCTAATGGGGTTCGGTTCACTTCTTG
TGTTGCTTAGGCTATCTTCTCAAGTGTTGTCGTTCTTAATTATTACTCCTAGCTGCTACTCTACTCTACTTGATGTATTA
TTATTACTCNGCTTTGATTGATGATAGGCACAATACCCTGTTGCCTTGTACTCGTAGGAGTATGTGCTGTTACTGTCTAA
CTGATCTGTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis