Browse Element(s) Details


Os.35561.3.S1_at

Description gb:AK100031.1
DB_XREF= gi:32985240
TID=Os.35561.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0009C08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148F02, full insert sequence.
FL= gb:AK100031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0154011/11DNA-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01490Os.34626.1.S1_a_at10/113+300759..301988expressed protein
LOC_Os03g01500OsAffx.10059.1.S1_at11/113+303205..304327hypothetical protein
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed
LOC_Os03g01540Os.35561.4.S1_x_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01540Os.35561.3.S1_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01550Os.35561.1.S1_x_at11/113+326776..330635expressed protein
LOC_Os03g01560OsAffx.24936.1.S1_at11/113+334208..334558hypothetical protein
LOC_Os03g01570Os.20075.1.S1_at9/113+335073..338062Uncharacterised protein family containing protein, expressed
LOC_Os03g01580Os.14614.1.A1_at11/113+340048..345359expressed protein
LOC_Os03g01590Os.49756.1.S1_at11/113+348670..353035PAIR1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35561.3.S1_at--509--4971Chr03:322920..322944 (25 bp)
GCATCAGATAGCTCAGATTTCGTGA
LOC_Os03g01540
Os.35561.3.S1_at--404--6531Chr03:322905..322929 (25 bp)
GATTTCGTGAACCATCAAGTAGTCG
LOC_Os03g01540
Os.35561.3.S1_at--1153--3211Chr03:322890..322914 (25 bp)
CAAGTAGTCGTGACTTTGTGGCTTA
LOC_Os03g01540
Os.35561.3.S1_at--436--851Chr03:322843..322867 (25 bp)
ATGGAACATTGTACTCTTGGATTTT
LOC_Os03g01540
Os.35561.3.S1_at--190--7011Chr03:322833..322857 (25 bp)
GTACTCTTGGATTTTCATTGTTGAA
LOC_Os03g01540
Os.35561.3.S1_at--223--3611Chr03:322818..322842 (25 bp)
CATTGTTGAAATTCATGTGGGCGGC
LOC_Os03g01540
Os.35561.3.S1_at--414--7591Chr03:322793..322817 (25 bp)
GGGCATATAGCTTCAGTGCTAATGG
LOC_Os03g01540
Os.35561.3.S1_at--49--7331Chr03:322778..322802 (25 bp)
GTGCTAATGGTGCTCTGATGAACTG
LOC_Os03g01540
Os.35561.3.S1_at--1040--7311Chr03:322726..322750 (25 bp)
GTGCTCTTGAGCTGAATCTTGACCT
LOC_Os03g01540
Os.35561.3.S1_at--1085--5891Chr03:322718..322742 (25 bp)
GAGCTGAATCTTGACCTTACATGAT
LOC_Os03g01540
Os.35561.3.S1_at--938--3651Chr03:322703..322727 (25 bp)
CTTACATGATGTGGCTGGCAGGTTT
LOC_Os03g01540
Target Sequence 
GCATCAGATAGCTCAGATTTCGTGAACCATCAAGTAGTCGTGACTTTGTGGCTTAGTTGAAAAGCAGTTCTTTATAGATG
GAACATTGTACTCTTGGATTTTCATTGTTGAAATTCATGTGGGCGGCGGGCATATAGCTTCAGTGCTAATGGTGCTCTGA
TGAACTGGTAATTTTGAGTGAAGCCAAAGGGTGTGTGCTCTTGAGCTGAATCTTGACCTTACATGATGTGGCTGGCAGGT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35561.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis