Browse Element(s) Details


Os.2406.2.S1_a_at

Description gb:AK072900.1
DB_XREF= gi:32982923
TID=Os.2406.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2406 (NCBI UniGene Cluster)
UG_TITLE=Scl1 protein (Scl1) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145A02, full insert sequence.
FL= gb:AK072900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4436011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44330Os.49719.1.S1_at11/112+26814539..26817515YbaK/prolyl-tRNA synthetases associated domain containing protein, expressed
LOC_Os02g44340Os.50545.1.S1_at11/112+26817767..26820004expressed protein
LOC_Os02g44350OsAffx.27771.1.S1_x_at11/112+26822577..26824805AT hook motif-containing protein, putative
LOC_Os02g44350OsAffx.27771.2.S1_s_at11/112+26822577..26824805AT hook motif-containing protein, putative
LOC_Os02g44360Os.2406.2.S1_a_at11/112+26835716..26838437GRAS family transcription factor containing protein, expressed
LOC_Os02g44370Os.21578.1.S1_at11/112+26846213..26849103GRAS family transcription factor containing protein, expressed
LOC_Os02g44380OsAffx.24722.1.S1_at11/112+26861140..26880311Beige/BEACH domain containing protein, expressed
LOC_Os02g44380Os.53748.1.S1_at1/112+26861140..26880311Beige/BEACH domain containing protein, expressed
LOC_Os02g44380Os.53748.2.S1_x_at1/112+26861140..26880311Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2406.2.S1_a_at--626--5151Chr02:26837919..26837943 (25 bp)
GCAACTGGGTTTAAGCCCGTTCAGC
LOC_Os02g44360
Os.2406.2.S1_a_at--239--8551Chr02:26838010..26838034 (25 bp)
TGGAGAAACGCGGAGCTGCTCTTAC
LOC_Os02g44360
Os.2406.2.S1_a_at--73--7651Chr02:26838052..26838076 (25 bp)
GGGAGCTTGTATCCATATCATCTTG
LOC_Os02g44360
Os.2406.2.S1_a_at--6--2911Chr02:26838110..26838134 (25 bp)
AAGGTTCCACCACCGTTTGCAAGCA
LOC_Os02g44360
Os.2406.2.S1_a_at--685--1171Chr02:26838146..26838170 (25 bp)
AGTAATGTCCATTTATTCTTGCAAT
LOC_Os02g44360
Os.2406.2.S1_a_at--911--6631Chr02:26838191..26838215 (25 bp)
GTTGTCTTGAGCTGTTGAACTCTTC
LOC_Os02g44360
Os.2406.2.S1_a_at--154--2551Chr02:26838208..26838232 (25 bp)
AACTCTTCATATTGCTTTTCGTTGC
LOC_Os02g44360
Os.2406.2.S1_a_at--1027--6651Chr02:26838228..26838252 (25 bp)
GTTGCAGCTTATTAGCTAGCCTAGT
LOC_Os02g44360
Os.2406.2.S1_a_at--266--7751Chr02:26838268..26838292 (25 bp)
GGTGTCAGTCTCTATAGCTAATGAT
LOC_Os02g44360
Os.2406.2.S1_a_at--729--6671Chr02:26838293..26838317 (25 bp)
GTTGCTTTAGGTTGTTGCCATGCTC
LOC_Os02g44360
Os.2406.2.S1_a_at--371--10791Chr02:26838304..26838328 (25 bp)
TTGTTGCCATGCTCTGCTCAATTAG
LOC_Os02g44360
Target Sequence 
GCAACTGGGTTTAAGCCCGTTCAGCNCAGCAACCTCGCCGAGGCACAGGCAGACTGCCTCCTGAAGCGGGTGCAGGTCCG
AGGATTCCATGTGGAGAAACGCGGAGCTGCTCTTACGCTCTACTGGCAGCGTGGGGAGCTTGTATCCATATCATCTTGGC
GGTGCTGATCAGCCATAAGCTTCACTCCACCAAGGTTCCACCACCGTTTGCAAGCATCNACCACTCCAGTAATGTCCATT
TATTCTTGCAATTAAATGTTGCAAATGAAATTGTTGTCTTGAGCTGTTGAACTCTTCATATTGCTTTTCGTTGCAGCTTA
TTAGCTAGCCTAGTGGATTTANGGAATATTGGTGTCAGTCTCTATAGCTAATGATGTTGCTTTAGGTTGTTGCCATGCTC
TGCTCAATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2406.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis