Browse Element(s) Details


Os.24085.1.S1_x_at

Description gb:AK068978.1
DB_XREF= gi:32979002
TID=Os.24085.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glucan endo-1,3-beta-glucosidase precursor (P0523A04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003K14, full insert sequence.
FL= gb:AK068978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1358011/11Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13550OsAffx.28431.1.S1_s_at11/117+7761734..7766059hypothetical protein
LOC_Os07g13550OsAffx.28431.2.S1_at6/117+7761734..7766059hypothetical protein
LOC_Os07g13560OsAffx.25367.1.S1_at2/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560OsAffx.13241.1.S1_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560Os.51887.1.S1_x_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13570OsAffx.16246.1.S1_at11/117+7783891..7784409hypothetical protein
LOC_Os07g13580Os.24085.1.S1_x_at11/117+7785085..7787103Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os07g13590Os.26753.1.S1_at11/117+7788517..7793327expressed protein
LOC_Os07g13600Os.21424.1.S1_at8/117+7794294..7795285expressed protein
LOC_Os07g13600OsAffx.9136.1.S1_x_at1/117+7794294..7795285expressed protein
LOC_Os07g13610OsAffx.19542.3.S1_x_at3/117+7806884..7810792retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24085.1.S1_x_at--137--9951Chr07:7786141..7786165 (25 bp)
TACGACGTCGGCCTCATGAAAGACA
LOC_Os07g13580
Os.24085.1.S1_x_at--167--5371Chr07:7786377..7786401 (25 bp)
GAAGAAGGTCTCCACGAAGGCCACC
LOC_Os07g13580
Os.24085.1.S1_x_at--456--3031Chr07:7786454..7786477 (24 bp)
AATCGGCCGACGAGAAGAATCCGGA
LOC_Os07g13580
Os.24085.1.S1_x_at--881--2651Chr07:7786682..7786949 (25 bp)
AAGCCGCGGGTGATGATGCTAAAGA
LOC_Os07g13580
Os.24085.1.S1_x_at--809--4171Chr07:7786970..7786994 (25 bp)
CCCATGGCCATGGAGATTCTTCAGA
LOC_Os07g13580
Os.24085.1.S1_x_at--477--6571Chr07:7786984..7787008 (25 bp)
GATTCTTCAGAAGCTATCAGTGTTA
LOC_Os07g13580
Os.24085.1.S1_x_at--122--1051Chr07:7787002..7787026 (25 bp)
AGTGTTATGTTCTCTGTACCTTCCA
LOC_Os07g13580
Os.24085.1.S1_x_at--2--6991Chr07:7787017..7787041 (25 bp)
GTACCTTCCATGCTTACAATTGCTC
LOC_Os07g13580
Os.24085.1.S1_x_at--788--9091Chr07:7787037..7787061 (25 bp)
TGCTCTGTCTGCAATACTTCTTCAT
LOC_Os07g13580
Os.24085.1.S1_x_at--584--3091Chr07:7787049..7787073 (25 bp)
AATACTTCTTCATCTCTAACTTCTC
LOC_Os07g13580
Os.24085.1.S1_x_at--54--2531Chr07:7787066..7787090 (25 bp)
AACTTCTCCTCAACTCATGGTGTAA
LOC_Os07g13580
Target Sequence 
TACGACGTCGGCCTCATGAAAGACACGGGGAAGTCATCAGCGTCGGCGCCGGCGCCGGCGAAGGGCGGCAATGCCAGCGG
CGCCGCCGTGACGAAGCGTGACTCGGAGTCGGAGGCCGCCGCGCCGGCTGATGAGGCGAGTGCGCCCGCGCCGTCGTCGG
TGGGGAAGAAGGTCTCCACGAAGGCCACCGCGCCGGCACCGTCGGACGACGGCTCGGCCTCGCCGGAGCCATCGGAGGGC
GAATCGGCCGACGAGAAGAATCCGGAGGAGGAGGAGGAGGAAGAGGGGGATGATGCCGCCGCGACGACGACGCCGGGGGG
CGACGGCGACTCGCCGGAGACGGAAGCCGCGGGTGATGATGCTAAAGAGAGCGAGGGAAAAAACAACCCCCATGGCCATG
GAGATTCTTCAGAAGCTATCAGTGTTATGTTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCAT
CTCTAACTTCTCCTCAACTCATGGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24085.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis