Browse Element(s) Details


Os.24143.1.A1_at

Description gb:AK064279.1
DB_XREF= gi:32974297
TID=Os.24143.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G02, full insert sequence.
FL= gb:AK064279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1334010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13310Os.56322.1.S1_at11/112+7097062..7100591Associated with HOX family protein, expressed
LOC_Os02g13320NANA2+7105533..7106147hypothetical protein
LOC_Os02g13330OsAffx.2595.1.S1_at11/112+7111106..7111729Bet v I allergen family protein, putative
LOC_Os02g13340Os.24143.1.A1_at10/112+7115786..7119630pentatricopeptide, putative, expressed
LOC_Os02g13350OsAffx.12016.1.S1_at11/112+7123770..7126123hydrolase, NUDIX family protein, expressed
LOC_Os02g13360OsAffx.12017.1.S1_at11/112+7126765..7131311expressed protein
LOC_Os02g13370Os.52377.1.S1_s_at11/112+7132009..7133382expressed protein
LOC_Os02g13370Os.52377.1.S1_at7/112+7132009..7133382expressed protein
LOC_Os02g13380Os.4170.1.S1_at8/112+7135189..7138046Early nodulin 93, putative, expressed
LOC_Os02g13390NANA2+7141810..7143857hypothetical protein
LOC_Os02g13400Os.7296.1.S1_at11/112+7144563..7150536Poly polymerase central domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24143.1.A1_at--320--8571Chr02:7119094..7119118 (25 bp)
TGGATCAGGCATACTGCGCAGCTAC
LOC_Os02g13340
Os.24143.1.A1_at--529--1751Chr02:7119117..7119141 (25 bp)
ACCTACACCCTGATTCTAAGCATTT
LOC_Os02g13340
Os.24143.1.A1_at--120--10511Chr02:7119140..7119164 (25 bp)
TTAATGTGCCATCGACTTTCAAAAT
LOC_Os02g13340
Os.24143.1.A1_at--1013--2851Chr02:7119169..7119193 (25 bp)
AAGTGTCCTCATTTCAAGTTCAAAG
LOC_Os02g13340
Os.24143.1.A1_at--293--5271Chr02:7119243..7119267 (25 bp)
GAATGCATCCTTCGTATCTTTTAAG
LOC_Os02g13340
Os.24143.1.A1_at--196--7491Chr02:7119322..7119346 (25 bp)
GTGGTAAGAGTTCTGCTTTGAAGTC
LOC_Os02g13340
Os.24143.1.A1_at--104--5091Chr02:7119476..7119500 (25 bp)
GCAGCCAATTTGTTTTTAAGATGTA
LOC_Os02g13340
Os.24143.1.A1_at--1073--2771Chr02:7119493..7119517 (25 bp)
AAGATGTAAACCCTGCTGCTTTCTT
LOC_Os02g13340
Os.24143.1.A1_at--1002--3811NONE
CTGCTTTCTTCCCTATATTTTGAGG
NONE
Os.24143.1.A1_at--229--9991Chr02:7119557..7119581 (25 bp)
TAGCCAACTGTTTCTGTAGTATTTG
LOC_Os02g13340
Os.24143.1.A1_at--58--411Chr02:7119595..7119619 (25 bp)
AGATAATACGAAACTTGACCTACAA
LOC_Os02g13340
Target Sequence 
TGGATCAGGCATACTGCGCAGCTACCTACACCCTGATTCTAAGCATTTAATGTGCCATCGACTTTCAAAATGTTAAAGTG
TCCTCATTTCAAGTTCAAAGGGCATGCANATTCATGTAGTTACAATGCTTTGGAAATGGCAGATGTAATGAATGCATCCT
TCGTATCTTTTAAGGTTCATCATATTACAAGAGAAAATTCTGGTGTGATATTGAAGACATTTCCAAAAGTGGTAAGAGTT
CTGCTTTGAAGTCATATAAGCTTCTACAACATGCAAACAAGCTATCTTTTAAATATTGGAGATCATATTTACAGTAACCA
GATGATTTGGTTATGAACTAGTATTCATTATTATTTTTTCACTATCTCTAAGTGCTGATTATGCAGCCAATTTGTTTTTA
AGATGTAAACCCTGCTGCTTTCTTCCCTATATTTTGAGGATGATTATAGTATGGAGAACATTATAGCCAACTGTTTCTGT
AGTATTTGATGTACATATCACAGATAATACGAAACTTGACCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24143.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis