Browse Element(s) Details


Os.56322.1.S1_at

Description gb:AK109849.1
DB_XREF= gi:32995058
TID=Os.56322.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F06, full insert sequence.
FL= gb:AK109849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1331011/11Associated with HOX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13280OsAffx.24224.1.S1_at11/112+7071614..7073455hypothetical protein
LOC_Os02g13290OsAffx.2593.1.S1_s_at11/112+7078711..70798482,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os02g13300Os.20931.1.S1_s_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13300OsAffx.2594.1.S1_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13310Os.56322.1.S1_at11/112+7097062..7100591Associated with HOX family protein, expressed
LOC_Os02g13320NANA2+7105533..7106147hypothetical protein
LOC_Os02g13330OsAffx.2595.1.S1_at11/112+7111106..7111729Bet v I allergen family protein, putative
LOC_Os02g13340Os.24143.1.A1_at10/112+7115786..7119630pentatricopeptide, putative, expressed
LOC_Os02g13350OsAffx.12016.1.S1_at11/112+7123770..7126123hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56322.1.S1_at--431--631Chr02:7099472..7099496 (25 bp)
ATGCTCGCAGCAAGGAGCGGCCTCA
LOC_Os02g13310
Os.56322.1.S1_at--268--1631Chr02:7099487..7099509 (23 bp)
AGCGGCCTCAGCAGGAACCAGGTGT
LOC_Os02g13310
Os.56322.1.S1_at--241--31Chr02:7099979..7100003 (25 bp)
ATTGGTTCATAAACGCTCGAGTTCG
LOC_Os02g13310
Os.56322.1.S1_at--10--4811Chr02:7099993..7100017 (25 bp)
GCTCGAGTTCGGCTATGGAAGCCAA
LOC_Os02g13310
Os.56322.1.S1_at--1111--7491Chr02:7100060..7100084 (25 bp)
GTGGTGCTGGAAATCAAGCTCTAGC
LOC_Os02g13310
Os.56322.1.S1_at--903--8531Chr02:7100087..7100111 (25 bp)
TGGAGCATATGAACAGCCAAGATGT
LOC_Os02g13310
Os.56322.1.S1_at--545--4391Chr02:7100102..7100126 (25 bp)
GCCAAGATGTGGTCAGTTAACCAGT
LOC_Os02g13310
Os.56322.1.S1_at--87--6771Chr02:7100117..7100141 (25 bp)
GTTAACCAGTTAGAGCTTTGGCTTG
LOC_Os02g13310
Os.56322.1.S1_at--203--1571Chr02:7100130..7100154 (25 bp)
AGCTTTGGCTTGGTTTGATGGCGAT
LOC_Os02g13310
Os.56322.1.S1_at--814--9991Chr02:7100157..7100181 (25 bp)
TAGCTGCGGATTAAGATCAATCAAT
LOC_Os02g13310
Os.56322.1.S1_at--1075--1991Chr02:7100214..7100238 (25 bp)
ACTCAGTTTAATTCGATGGTTTCAG
LOC_Os02g13310
Target Sequence 
ATGCTCGCAGCAAGGAGCGGCCTCAGCAGGAACCAGGTGTCGAATTGGTTCATAAACGCTCGAGTTCGGCTATGGAAGCC
AATGATCGAGGAGATGTGCGAGGAGCTGAAGAGGAGCTCGGGTGGTGGTGCTGGAAATCAAGCTCTAGCAATGGAGCATA
TGAACAGCCAAGATGTGGTCAGTTAACCAGTTAGAGCTTTGGCTTGGTTTGATGGCGATGTTAGCTGCGGATTAAGATCA
ATCAATGCCATTGATCTATTTATCGATCACCAATTGTAACTCAGTTTAATTCGATGGTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis