Browse Element(s) Details


OsAffx.24224.1.S1_at

Description tigr:9630.m01222
TID=OsAffx.24224.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1328011/11hypothetical protein
LOC_Os08g335501/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13230OsAffx.7362.1.S1_x_at1/112+7050459..7051274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13240Os.46314.3.S1_at3/112+7053347..7055389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13240OsAffx.7362.1.S1_x_at1/112+7053347..7055389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.2.S1_s_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.1.S1_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13260OsAffx.19451.5.S1_x_at11/112+7062963..7064270hypothetical protein
LOC_Os02g13260OsAffx.19451.4.S1_x_at1/112+7062963..7064270hypothetical protein
LOC_Os02g13270Os.49467.1.S1_at9/112+7066391..7069494Peroxisomal membrane protein PMP22, putative, expressed
LOC_Os02g13280OsAffx.24224.1.S1_at11/112+7071614..7073455hypothetical protein
LOC_Os02g13290OsAffx.2593.1.S1_s_at11/112+7078711..70798482,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os02g13300Os.20931.1.S1_s_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13300OsAffx.2594.1.S1_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13310Os.56322.1.S1_at11/112+7097062..7100591Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24224.1.S1_at--1139--2771Chr02:7073347..7073371 (25 bp)
AAGAGATACCGGCAGTATCGATGAC
LOC_Os02g13280
OsAffx.24224.1.S1_at--413--1271Chr02:7073350..7073374 (25 bp)
AGATACCGGCAGTATCGATGACAAG
LOC_Os02g13280
OsAffx.24224.1.S1_at--460--6891Chr02:7073361..7073385 (25 bp)
GTATCGATGACAAGAACCCCGGGCA
LOC_Os02g13280
OsAffx.24224.1.S1_at--1028--10031Chr02:7073362..7073386 (25 bp)
TATCGATGACAAGAACCCCGGGCAG
LOC_Os02g13280
OsAffx.24224.1.S1_at--80--511Chr02:7073363..7073387 (25 bp)
ATCGATGACAAGAACCCCGGGCAGT
LOC_Os02g13280
OsAffx.24224.1.S1_at--775--4051Chr02:7073365..7073389 (25 bp)
CGATGACAAGAACCCCGGGCAGTCG
LOC_Os02g13280
OsAffx.24224.1.S1_at--258--2751Chr02:7073372..7073396 (25 bp)
AAGAACCCCGGGCAGTCGACGCGCA
LOC_Os02g13280
OsAffx.24224.1.S1_at--133--1151Chr02:7073385..7073409 (25 bp)
AGTCGACGCGCACCACAAAGACACA
LOC_Os02g13280
OsAffx.24224.1.S1_at--345--5811Chr02:7073389..7073413 (25 bp)
GACGCGCACCACAAAGACACAGGAA
LOC_Os02g13280
OsAffx.24224.1.S1_at--353--4591Chr02:7073392..7073416 (25 bp)
GCGCACCACAAAGACACAGGAAGAG
LOC_Os02g13280
OsAffx.24224.1.S1_at--115--3312Chr08:20816326..20816345 (20 bp)
CACAAAGACACAGGAAGAGGAGAGT
LOC_Os08g33550
Target Sequence 
AAGAGATACCGGCAGTATCGATGACAAGAACCCCGGGCAGTCGACGCGCACCACAAAGACACAGGAAGAGGAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis