Browse Element(s) Details


Os.49467.1.S1_at

Description gb:AK121976.1
DB_XREF= gi:37991599
TID=Os.49467.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49467 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108J17, full insert sequence.
FL= gb:AK121976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g132709/11Peroxisomal membrane protein PMP22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13210OsAffx.32083.1.S1_x_at8/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.3.S1_x_at8/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.1.S1_at6/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.4.S1_x_at3/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.2.S1_x_at1/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13220OsAffx.19451.4.S1_x_at11/112+7044795..7046102expressed protein
LOC_Os02g13220OsAffx.19451.5.S1_x_at3/112+7044795..7046102expressed protein
LOC_Os02g13230OsAffx.7362.1.S1_x_at1/112+7050459..7051274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13240Os.46314.3.S1_at3/112+7053347..7055389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13240OsAffx.7362.1.S1_x_at1/112+7053347..7055389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.2.S1_s_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.1.S1_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13260OsAffx.19451.5.S1_x_at11/112+7062963..7064270hypothetical protein
LOC_Os02g13260OsAffx.19451.4.S1_x_at1/112+7062963..7064270hypothetical protein
LOC_Os02g13270Os.49467.1.S1_at9/112+7066391..7069494Peroxisomal membrane protein PMP22, putative, expressed
LOC_Os02g13280OsAffx.24224.1.S1_at11/112+7071614..7073455hypothetical protein
LOC_Os02g13290OsAffx.2593.1.S1_s_at11/112+7078711..70798482,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os02g13300Os.20931.1.S1_s_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13300OsAffx.2594.1.S1_at11/112+7083289..7087339Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49467.1.S1_at--1033--6771Chr02:7067512..7067536 (25 bp)
GTTACTGGAGCAGATCACTTCTTCT
LOC_Os02g13270
Os.49467.1.S1_at--711--10591Chr02:7067491..7067515 (25 bp)
TTCTCCCTGGAATAATCTGCTCTTC
LOC_Os02g13270
Os.49467.1.S1_at--866--471Chr02:7067477..7067501 (25 bp)
ATCTGCTCTTCTTGTTCTATTATGG
LOC_Os02g13270
Os.49467.1.S1_at--552--5531NONE
GAAACAATATCCCTCGGTGCAGTTG
NONE
Os.49467.1.S1_at--202--1251NONE
AGTTGTCTGCTTGGATGTTTTGGCC
NONE
Os.49467.1.S1_at--144--9031Chr02:7066825..7066849 (25 bp)
TGCAGTTCCGGGTGATTTTCCACAG
LOC_Os02g13270
Os.49467.1.S1_at--223--7671Chr02:7066688..7066712 (25 bp)
GGGATATTTCTTAACCTTCGTGCAA
LOC_Os02g13270
Os.49467.1.S1_at--817--7551Chr02:7066663..7066687 (25 bp)
GGGCCATGTCTTTGAAGCAGTCGTA
LOC_Os02g13270
Os.49467.1.S1_at--648--1751Chr02:7066611..7066635 (25 bp)
ACCTCTCCAACTTGATTCTTACTGA
LOC_Os02g13270
Os.49467.1.S1_at--522--111Chr02:7066450..7066474 (25 bp)
ATTCTGTTGACACCGGTTATGACTT
LOC_Os02g13270
Os.49467.1.S1_at--419--451Chr02:7066399..7066423 (25 bp)
ATCTATGGATGAGCTTGGCCTGCCT
LOC_Os02g13270
Target Sequence 
GTTACTGGAGCAGATCACTTCTTCTCCCTGGAATAATCTGCTCTTCTTGTTCTATTATGGATATGTTGTTGAGAGGAGGC
CTTTTAAGGAGGTGAAGACCAGGGTTAAGAAACAATATCCCTCGGTGCAGTTGTCTGCTTGGATGTTTTGGCCAATAGTT
GGTTGGATAAATCATATGTACATGCCGTTGCAGTTCCGGGTGATTTTCCACAGCTTTGTTGCATGTTGCTGGGGGATATT
TCTTAACCTTCGTGCAAGGGCCATGTCTTTGAAGCAGTCGTAGAGAATTTAGTAGGAAAAAATTGCAGCACCTCTCCAAC
TTGATTCTTACTGACTAAAGAACAAGGATGCTGAGTGCTACGCAATATGCAGTTAGCAACAAATTGTTACGAGTGGTTTG
GGATTTCGAGTATTTATCTGGTGTTTAGTTGGGTTTGTTTGTCAGCAAATGCGAGATTGTTAACAAAGGTATTCTGTTGA
CACCGGTTATGACTTATGATGAACCCAAAGTATGATTTGATATCTATGGATGAGCTTGGCCTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis