Browse Element(s) Details


Os.20931.1.S1_s_at

Description gb:BQ907173
DB_XREF= gi:22305951
DB_XREF=N004E03
CLONE=N004E03
TID=Os.20931.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.20931 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194348.1 (A.thaliana) putative mitochondrial carrier protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1330011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13250OsAffx.23366.2.S1_s_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.1.S1_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13260OsAffx.19451.5.S1_x_at11/112+7062963..7064270hypothetical protein
LOC_Os02g13260OsAffx.19451.4.S1_x_at1/112+7062963..7064270hypothetical protein
LOC_Os02g13270Os.49467.1.S1_at9/112+7066391..7069494Peroxisomal membrane protein PMP22, putative, expressed
LOC_Os02g13280OsAffx.24224.1.S1_at11/112+7071614..7073455hypothetical protein
LOC_Os02g13290OsAffx.2593.1.S1_s_at11/112+7078711..70798482,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os02g13300Os.20931.1.S1_s_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13300OsAffx.2594.1.S1_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13310Os.56322.1.S1_at11/112+7097062..7100591Associated with HOX family protein, expressed
LOC_Os02g13320NANA2+7105533..7106147hypothetical protein
LOC_Os02g13330OsAffx.2595.1.S1_at11/112+7111106..7111729Bet v I allergen family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20931.1.S1_s_at--302--10551Chr02:7086243..7086267 (25 bp)
TTCATCATCCAACCTAGAAAAGGGA
LOC_Os02g13300
Os.20931.1.S1_s_at--592--3931Chr02:7086316..7086340 (25 bp)
CGGCAACTGTTCTCAGGATTATCTA
LOC_Os02g13300
Os.20931.1.S1_s_at--71--6731Chr02:7086324..7086348 (25 bp)
GTTCTCAGGATTATCTATCAACTAT
LOC_Os02g13300
Os.20931.1.S1_s_at--128--371Chr02:7086340..7086540 (25 bp)
ATCAACTATTTGAAGGTGGTCCCAT
LOC_Os02g13300
Os.20931.1.S1_s_at--605--8991Chr02:7086878..7086899 (22 bp)
TGAAGGTGGTCCCATCAGTAGCCAT
LOC_Os02g13300
Os.20931.1.S1_s_at--510--7791Chr02:7086882..7086906 (25 bp)
GGTCCCATCAGTAGCCATAGGGTTT
LOC_Os02g13300
Os.20931.1.S1_s_at--1039--10071Chr02:7086899..7086923 (25 bp)
TAGGGTTTACAGTTTATGACTCAAT
LOC_Os02g13300
Os.20931.1.S1_s_at--951--671Chr02:7086914..7086938 (25 bp)
ATGACTCAATGAAGGTTTGGCTTAA
LOC_Os02g13300
Os.20931.1.S1_s_at--1003--10231Chr02:7086929..7086953 (25 bp)
TTTGGCTTAAAGTTCCATCGAGAGA
LOC_Os02g13300
Os.20931.1.S1_s_at--36--531Chr02:7086945..7086969 (25 bp)
ATCGAGAGAGGACACGGCTATTGCT
LOC_Os02g13300
Os.20931.1.S1_s_at--866--1931Chr02:7086958..7086982 (25 bp)
ACGGCTATTGCTGCGCTGACAGAAG
LOC_Os02g13300
Target Sequence 
TTCATCATCCAACCTAGAAAAGGGAAAAGGAACATTTGGAAGCATTGCTATGATAGCAAAACATCAAGGTTGNCGGCAAC
TGTTCTCAGGATTATCTATCAACTATTTGAAGGTGGTCCCATCAGTAGCCATAGGGTTTACAGTTTATGACTCAATGAAG
GTTTGGCTTAAAGTTCCATCGAGAGAGGACACGGCTATTGCTGCGCTGACAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20931.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis