Browse Element(s) Details


OsAffx.19451.4.S1_x_at

Description tigr:9630.m01216
TID=OsAffx.19451.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161556 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1322011/11expressed protein
LOC_Os02g132601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13170Os.17268.1.S1_at10/112+7016805..7024340Mitochondrial carrier protein, expressed
LOC_Os02g13180NANA2+7024790..7025386Skp1 family, dimerisation domain containing protein, expressed
LOC_Os02g13190OsAffx.19451.3.S1_s_at11/112+7026620..7028304expressed protein
LOC_Os02g13190OsAffx.19451.3.S1_x_at11/112+7026620..7028304expressed protein
LOC_Os02g13190OsAffx.24480.1.S1_x_at1/112+7026620..7028304expressed protein
LOC_Os02g13200Os.5171.1.S1_at10/112+7032348..7034839expressed protein
LOC_Os02g13210OsAffx.32083.1.S1_x_at8/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.3.S1_x_at8/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.1.S1_at6/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.4.S1_x_at3/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.2.S1_x_at1/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13220OsAffx.19451.4.S1_x_at11/112+7044795..7046102expressed protein
LOC_Os02g13220OsAffx.19451.5.S1_x_at3/112+7044795..7046102expressed protein
LOC_Os02g13230OsAffx.7362.1.S1_x_at1/112+7050459..7051274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13240Os.46314.3.S1_at3/112+7053347..7055389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13240OsAffx.7362.1.S1_x_at1/112+7053347..7055389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.2.S1_s_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.1.S1_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13260OsAffx.19451.5.S1_x_at11/112+7062963..7064270hypothetical protein
LOC_Os02g13260OsAffx.19451.4.S1_x_at1/112+7062963..7064270hypothetical protein
LOC_Os02g13270Os.49467.1.S1_at9/112+7066391..7069494Peroxisomal membrane protein PMP22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19451.4.S1_x_at--959--1511Chr02:7045348..7045372 (25 bp)
AGCAGCAGCGCGCTCCGGTGAACAA
LOC_Os02g13220
OsAffx.19451.4.S1_x_at--1068--3771Chr02:7045336..7045360 (25 bp)
CTCCGGTGAACAAGTCGAACAGCTT
LOC_Os02g13220
OsAffx.19451.4.S1_x_at--245--5951Chr02:7045211..7045235 (25 bp)
GAGCACGAGTACATCACGGTCGGCA
LOC_Os02g13220
OsAffx.19451.4.S1_x_at--35--3271Chr02:7044984..7045008 (25 bp)
CAACTGCGCCGGGTTCTACCGGAAG
LOC_Os02g13220
OsAffx.19451.4.S1_x_at--1062--4552Chr02:7063969..7064086 (25 bp)
GCGCCGGGTTCTACCGGAAGATGCA
LOC_Os02g13260
OsAffx.19451.4.S1_x_at--1125--8871Chr02:7044847..7044871 (25 bp)
TGAAACAGTTCAGGAGGTTGGCGTC
LOC_Os02g13220
OsAffx.19451.4.S1_x_at--550--11Chr02:7044845..7044869 (25 bp)
AAACAGTTCAGGAGGTTGGCGTCGC
LOC_Os02g13220
OsAffx.19451.4.S1_x_at--116--2491Chr02:7044844..7044868 (25 bp)
AACAGTTCAGGAGGTTGGCGTCGCC
LOC_Os02g13220
OsAffx.19451.4.S1_x_at--43--2131Chr02:7044843..7044867 (25 bp)
ACAGTTCAGGAGGTTGGCGTCGCCG
LOC_Os02g13220
OsAffx.19451.4.S1_x_at--1062--3431Chr02:7044842..7044866 (25 bp)
CAGTTCAGGAGGTTGGCGTCGCCGT
LOC_Os02g13220
OsAffx.19451.4.S1_x_at--599--8371Chr02:7044828..7044852 (25 bp)
GGCGTCGCCGTCGTTCAAGGACGAC
LOC_Os02g13220
Target Sequence 
AGCAGCAGCGCGCTCCGGTGAACAAGTCGAACAGCTTCGGCAGCAGCAGCCGCCGCCGCGGCGCACGCGGCAACGGCTGG
ACGCCGGAGCTGGAGGAGGAGATGCGCGGCATCCTCCGCGTCATCAAGGCCAAGGACGAGCACGAGTACATCACGGTCGG
CAAGATGGTCCTCGGCCTCAACAAGGGCCTCGCCGTGGCGGGGCCAGCGCTCGCCGGCACGGCCGCGGTGGCCGCGGCCT
TCATCGGCTCCGGCGAGGCCGGCGCGTGGGCGTCCGGCGCCGCCGTCCTCGGCGGGGCGCTGGCGGCGGCGGCGAACACC
GTGGAGCACGGCGGGCAGCTGGGCATGGTGTTCGAGCTGCTCCGCAACTGCGCCGGGTTCTACCGGAAGATGCAGGAGGA
GATCGAGGCGAACCTGGGCGAGGCCGACGTCGAGAGGAGGGAGGACGGCGAGGTGTTGGAGACGAAGGTGGCGCTGCAGC
TCGGGCGGAGCACGTCGGAGCTGAAACAGTTCAGGAGGTTGGCGTCGCCGTCGTTCAAGGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19451.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis