Browse Element(s) Details


Os.7296.1.S1_at

Description gb:AK103143.1
DB_XREF= gi:32988352
TID=Os.7296.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120H04, full insert sequence.
FL= gb:AK103143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1340011/11Poly polymerase central domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13340Os.24143.1.A1_at10/112+7115786..7119630pentatricopeptide, putative, expressed
LOC_Os02g13350OsAffx.12016.1.S1_at11/112+7123770..7126123hydrolase, NUDIX family protein, expressed
LOC_Os02g13360OsAffx.12017.1.S1_at11/112+7126765..7131311expressed protein
LOC_Os02g13370Os.52377.1.S1_s_at11/112+7132009..7133382expressed protein
LOC_Os02g13370Os.52377.1.S1_at7/112+7132009..7133382expressed protein
LOC_Os02g13380Os.4170.1.S1_at8/112+7135189..7138046Early nodulin 93, putative, expressed
LOC_Os02g13390NANA2+7141810..7143857hypothetical protein
LOC_Os02g13400Os.7296.1.S1_at11/112+7144563..7150536Poly polymerase central domain containing protein, expressed
LOC_Os02g13410OsAffx.2597.1.S1_at11/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13410Os.46572.2.S1_x_at1/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13420Os.7123.2.S1_x_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13420Os.7123.2.S1_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13430OsAffx.2598.1.S1_at11/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13430Os.7123.2.S1_x_at1/112+7172556..7175908Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7296.1.S1_at--783--2851Chr02:7149709..7149733 (25 bp)
AAGTGATCTGAATTGGCCTTCCAGA
LOC_Os02g13400
Os.7296.1.S1_at--572--5431Chr02:7149862..7149886 (25 bp)
GAACCGGATGCATCCCAGGTTTGAA
LOC_Os02g13400
Os.7296.1.S1_at--683--3951Chr02:7150085..7150109 (25 bp)
CGGAGACTTGAACAGATGGCGCCCA
LOC_Os02g13400
Os.7296.1.S1_at--463--871Chr02:7150100..7150124 (25 bp)
ATGGCGCCCAAATCTTCATCAAATC
LOC_Os02g13400
Os.7296.1.S1_at--611--591Chr02:7150147..7150171 (25 bp)
ATGCCTTTCGGTTGCTTTCAGGATA
LOC_Os02g13400
Os.7296.1.S1_at--280--5891Chr02:7150274..7150298 (25 bp)
GAGCGAGCACCAGTGTATCAGTTAA
LOC_Os02g13400
Os.7296.1.S1_at--486--9771Chr02:7150296..7150320 (25 bp)
TAAGGTAGTGCCTTTCCTTGGCTGC
LOC_Os02g13400
Os.7296.1.S1_at--1045--10131Chr02:7150390..7150414 (25 bp)
TATCCATTTTCACTGTGTCCACTTT
LOC_Os02g13400
Os.7296.1.S1_at--608--8691Chr02:7150405..7150429 (25 bp)
TGTCCACTTTCCTATACTTGTTTCA
LOC_Os02g13400
Os.7296.1.S1_at--509--6991Chr02:7150444..7150468 (25 bp)
GTACTGGTGGTACTTCACAGGGTTT
LOC_Os02g13400
Os.7296.1.S1_at--99--2911Chr02:7150510..7150534 (25 bp)
AAGGTTGTTTTCATCCTGGATTCTA
LOC_Os02g13400
Target Sequence 
AAGTGATCTGAATTGGCCTTCCAGATGGAGATCTTTTCAGGTGTGGAACCGGATGCATCCCAGGTTTGAAAGCATTCTTG
AGATTTTGTCAGGAGACGGAGACTTGAACAGATGGCGCCCAAATCTTCATCAAATCATACGCTGAAAGAAAAAAAANGGA
TGCCTTTCGGTTGCTTTCAGGATAAGAGAAGCTCTGGGATTGAGAAACCATGGAAGCTCAAATATGAAGTTCTTAGGCNA
GGCTCTGGAGTTATGGACTTGTGGTTGTGGGAGGACTGAGGAGACTGAGCGAGCACCAGTGTATCAGTTAAGGTAGTGCC
TTTCCTTGGCTGCTAGTTAGGTCTAGGTNAGTATATTTGGTAGTTTTAAAANAAAAAGAAATAGAATGCCATTATTCTTG
GCTATCCATTTTCACTGTGTCCACTTTCCTATACTTGTTTCAGATTCGTTGATGAAGTACTGGTGGTACTTCACAGGGTT
TGTGAAAGATTGATGGGAAANAGNTGATATCTAATTTTGAATGAAGGTTGTTTTCATCCTGGATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis