Browse Element(s) Details


OsAffx.2598.1.S1_at

Description tigr:9630.m01236
TID=OsAffx.2598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1343011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13400Os.7296.1.S1_at11/112+7144563..7150536Poly polymerase central domain containing protein, expressed
LOC_Os02g13410OsAffx.2597.1.S1_at11/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13410Os.46572.2.S1_x_at1/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13420Os.7123.2.S1_x_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13420Os.7123.2.S1_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13430OsAffx.2598.1.S1_at11/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13430Os.7123.2.S1_x_at1/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13440NANA2+7177378..7178234hypothetical protein
LOC_Os02g13450OsAffx.2599.1.S1_at10/112+7179394..7181309hypothetical protein
LOC_Os02g13460OsAffx.12018.1.S1_at11/112+7183462..7187529Leucine Rich Repeat family protein
LOC_Os02g13470NANA2+7192204..7198866retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2598.1.S1_at--319--6291Chr02:7173460..7173484 (25 bp)
GATGTTGCTAGAGGCCTCAGCTACA
LOC_Os02g13430
OsAffx.2598.1.S1_at--292--8891Chr02:7173431..7173455 (25 bp)
TGAGGATTTTGTGCAGCCGGTCATC
LOC_Os02g13430
OsAffx.2598.1.S1_at--181--10851Chr02:7173342..7173366 (25 bp)
TTGGGCTTGCTCGTATCCTTGCCAA
LOC_Os02g13430
OsAffx.2598.1.S1_at--408--2851Chr02:7173319..7173343 (25 bp)
AAGTCTGGTGAGTCGGAATCGGCCT
LOC_Os02g13430
OsAffx.2598.1.S1_at--160--6111Chr02:7172816..7172840 (25 bp)
GAGTCTGGCAGCTGCTTGGCCAAAT
LOC_Os02g13430
OsAffx.2598.1.S1_at--303--791Chr02:7172793..7172817 (25 bp)
ATGGGCATCGAAGCGGTACAACAAT
LOC_Os02g13430
OsAffx.2598.1.S1_at--944--7971Chr02:7172730..7172754 (25 bp)
GGATCCTTCCTACCTGGATGACATG
LOC_Os02g13430
OsAffx.2598.1.S1_at--428--9371Chr02:7172695..7172719 (25 bp)
TCGAGCTCGGCGTGGTTTGCACCAG
LOC_Os02g13430
OsAffx.2598.1.S1_at--854--10271Chr02:7172680..7172704 (25 bp)
TTTGCACCAGTGAGGAGCCGGCGTC
LOC_Os02g13430
OsAffx.2598.1.S1_at--472--891Chr02:7172654..7172678 (25 bp)
AGGCCTCCGATGAGTGATGTTCTCC
LOC_Os02g13430
OsAffx.2598.1.S1_at--402--3371Chr02:7172630..7172654 (25 bp)
CACCGGCTCATGCAGTTTGATCATA
LOC_Os02g13430
Target Sequence 
GATGTTGCTAGAGGCCTCAGCTACATGCATGAGGATTTTGTGCAGCCGGTCATCCACCGCGATGTCAAGTGTAGCAACAT
TCTTCTCGACCGCGAGTTCAGGGCCAAGATCGCTGATTTTGGGCTTGCTCGTATCCTTGCCAAGTCTGGTGAGTCGGAAT
CGGCCTCCGCCGTCTGTGGCACCTTTGGCTACATTGCTCCAGAGTACGCATACAGGTCAAAGGTAAGCGTTAAGGTGGAC
GTATACAGCTTCGGTGTGGTGCTGCTAGAGCTGGCCACCGGCCGAGGGCCGCAAGATGGTGGCACGGAGTCTGGCAGCTG
CTTGGCCAAATGGGCATCGAAGCGGTACAACAATGGTGGCCCGGTCGCCGACTTGGTCGACGGCGAGATTCAGGATCCTT
CCTACCTGGATGACATGGTGGCCGTGTTCGAGCTCGGCGTGGTTTGCACCAGTGAGGAGCCGGCGTCGAGGCCTCCGATG
AGTGATGTTCTCCACCGGCTCATGCAGTTTGATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis