Browse Element(s) Details


OsAffx.2599.1.S1_at

Description tigr:9630.m01238
TID=OsAffx.2599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1345010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13410OsAffx.2597.1.S1_at11/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13410Os.46572.2.S1_x_at1/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13420Os.7123.2.S1_x_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13420Os.7123.2.S1_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13430OsAffx.2598.1.S1_at11/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13430Os.7123.2.S1_x_at1/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13440NANA2+7177378..7178234hypothetical protein
LOC_Os02g13450OsAffx.2599.1.S1_at10/112+7179394..7181309hypothetical protein
LOC_Os02g13460OsAffx.12018.1.S1_at11/112+7183462..7187529Leucine Rich Repeat family protein
LOC_Os02g13470NANA2+7192204..7198866retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g13480OsAffx.12251.2.A1_at11/112+7203990..7204825hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2599.1.S1_at--267--9131Chr02:7181227..7181247 (21 bp)
TGCTGTTCCTGCAGTGCAATGCCGG
LOC_Os02g13450
OsAffx.2599.1.S1_at--651--9271NONE
TCCTGCAGTGCAATGCCGGAGCAAT
NONE
OsAffx.2599.1.S1_at--411--3031Chr02:7179551..7179572 (22 bp)
AATGCCGGAGCAATGGTGACATGTT
LOC_Os02g13450
OsAffx.2599.1.S1_at--410--1451Chr02:7179521..7179545 (25 bp)
AGAAGATCAACATACCACCTGGGCC
LOC_Os02g13450
OsAffx.2599.1.S1_at--639--1771Chr02:7179505..7179529 (25 bp)
ACCTGGGCCGCTATGTGCAAAGCGA
LOC_Os02g13450
OsAffx.2599.1.S1_at--821--10111Chr02:7179494..7179518 (25 bp)
TATGTGCAAAGCGACCAGACCTCTG
LOC_Os02g13450
OsAffx.2599.1.S1_at--692--5851Chr02:7179482..7179506 (25 bp)
GACCAGACCTCTGCAAGAACTGCTG
LOC_Os02g13450
OsAffx.2599.1.S1_at--1127--2731Chr02:7179468..7179492 (25 bp)
AAGAACTGCTGGTGTTGTGAGGTCA
LOC_Os02g13450
OsAffx.2599.1.S1_at--33--9671Chr02:7179446..7179470 (25 bp)
TCAGCGACGGGCAATGCTACCAGAG
LOC_Os02g13450
OsAffx.2599.1.S1_at--253--3991Chr02:7179439..7179463 (25 bp)
CGGGCAATGCTACCAGAGTCTCGAG
LOC_Os02g13450
OsAffx.2599.1.S1_at--167--1731Chr02:7179428..7179452 (25 bp)
ACCAGAGTCTCGAGGCCTGCCAGGT
LOC_Os02g13450
Target Sequence 
TGCTGTTCCTGCAGTGCAATGCCGGAGCAATGGTGACATGTTGGGAGAGAAGATCAACATACCACCTGGGCCGCTATGTG
CAAAGCGACCAGACCTCTGCAAGAACTGCTGGTGTTGTGAGGTCAGCGACGGGCAATGCTACCAGAGTCTCGAGGCCTGC
CAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis