Browse Element(s) Details


Os.7123.2.S1_x_at

Description gb:AK111918.1
DB_XREF= gi:37988581
TID=Os.7123.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148M04, full insert sequence.
FL= gb:AK111918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1342011/11Leucine Rich Repeat family protein, expressed
LOC_Os02g135104/11Leucine Rich Repeat family protein, expressed
LOC_Os02g134301/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13390NANA2+7141810..7143857hypothetical protein
LOC_Os02g13400Os.7296.1.S1_at11/112+7144563..7150536Poly polymerase central domain containing protein, expressed
LOC_Os02g13410OsAffx.2597.1.S1_at11/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13410Os.46572.2.S1_x_at1/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13420Os.7123.2.S1_x_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13420Os.7123.2.S1_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13430OsAffx.2598.1.S1_at11/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13430Os.7123.2.S1_x_at1/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13440NANA2+7177378..7178234hypothetical protein
LOC_Os02g13450OsAffx.2599.1.S1_at10/112+7179394..7181309hypothetical protein
LOC_Os02g13460OsAffx.12018.1.S1_at11/112+7183462..7187529Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0010200biological_processresponse to chitin
GO:0030154biological_processcell differentiation
GO:0050832biological_processdefense response to fungi
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7123.2.S1_x_at--396--3851Chr02:7165828..7165852 (25 bp)
CTGACATCCGTCTCTTCAATAACAA
LOC_Os02g13420
Os.7123.2.S1_x_at--687--2631Chr02:7165923..7165947 (25 bp)
AACCTCTCTGGTGAGCTGCCGGATA
LOC_Os02g13420
Os.7123.2.S1_x_at--1144--3811Chr02:7165938..7165962 (25 bp)
CTGCCGGATACACTTTGCTTCAATA
LOC_Os02g13420
Os.7123.2.S1_x_at--608--8613Chr02:7165981..7166005 (25 bp)
TGGTGTTCAACAATAGCTTCTCCGG
LOC_Os02g13420
Os.7123.2.S1_x_at--396--1272Chr02:7166092..7166116 (25 bp)
AGATATGGTCATTCGAGTTGCTCAC
LOC_Os02g13420
Os.7123.2.S1_x_at--421--6532Chr02:7166126..7166150 (25 bp)
GATTTACAACAACTTCACCGGCACT
LOC_Os02g13420
Os.7123.2.S1_x_at--384--4532Chr02:7166226..7166250 (25 bp)
GCCGCCGTCGGTCTGAAGAGTTTCA
LOC_Os02g13420
Os.7123.2.S1_x_at--799--2551Chr02:7166285..7166309 (25 bp)
AACTGACATGTCTAGGCTCGCCAAC
LOC_Os02g13420
Os.7123.2.S1_x_at--933--6651Chr02:7166339..7166363 (25 bp)
GTTGCTCACCACTGTCAAGATTTAT
LOC_Os02g13420
Os.7123.2.S1_x_at--680--10191Chr02:7166361..7166385 (25 bp)
TATATTAACAACTTCGCCAGCACTC
LOC_Os02g13420
Os.7123.2.S1_x_at--151--9331Chr02:7166374..7166398 (25 bp)
TCGCCAGCACTCTACCAAGTAATAA
LOC_Os02g13420
Target Sequence 
CTGACATCCGTCTCTTCAATAACAAGCTCTCTGGGCCCCTACCCGCGGAGCTTGGAAAGCATTCGGAATTGGGGAATTTT
GAGGTGTCCAACAACAACCTCTCTGGTGAGCTGCCGGATACACTTTGCTTCAATAAGAAGCTCTTTGACATTGTGGTGTT
CAACAATAGCTTCTCCGGCGTGTTCCCGACGAACCTTGGGGATTGCAAAACCATCAACAACATCATGGCATACAACAACC
ACTTTGTTGGGGACTTTCCCAAGAAGATATGGTCATTCGAGTTGCTCACCAATGTCATGATTTACAACAACTTCACCGGC
ACTCTACCTAGTGAGATATCATTTAACATCTTAAGGATTGAGATGGGGAACAATCGCTTCTCCGGTGCCCTCCCGTCGGC
CGCCGTCGGTCTGAAGAGTTTCACGGCGGAGAACAACCAGTTCTCCGGTGAACTGCCAACTGACATGTCTAGGCTCGCCA
ACCTCACCATGTTGAACCTCGCCGGCAACCAGTTGCTCACCACTGTCAAGATTTATATTAACAACTTCGCCAGCACTCTA
CCAAGTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7123.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis