Browse Element(s) Details


Os.46572.2.S1_x_at

Description gb:NM_196028.1
DB_XREF= gi:37533415
TID=Os.46572.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46572 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNBa0058E19.16), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g137802/11Leucine Rich Repeat family protein
LOC_Os02g134101/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13750NANA2+7402713..7410877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g13760OsAffx.24233.1.S1_at11/112+7428762..7429193hypothetical protein
LOC_Os02g13770Os.54067.1.S1_at11/112+7431357..7433852transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g13780OsAffx.24234.2.S1_s_at9/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13780OsAffx.24234.1.S1_x_at4/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13780Os.46572.2.S1_x_at2/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13790NANA2+7449739..7450231hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46572.2.S1_x_at--494--8212Chr10:10757362..10757386 (25 bp)
GGAATCCCATTGTTCTTGGCTAATG
NONE
Os.46572.2.S1_x_at--192--3091Chr10:10757419..10757443 (25 bp)
AATAGCCTCTATGGGAGCATCCCTG
NONE
Os.46572.2.S1_x_at--268--931Chr10:10757577..10757601 (25 bp)
AGGCATACCACCATCTCTAGGGAAT
NONE
Os.46572.2.S1_x_at--186--9531Chr10:10757592..10757616 (25 bp)
TCTAGGGAATCTCTCATCGCTTACA
NONE
Os.46572.2.S1_x_at--1043--2371Chr10:10757668..10757692 (25 bp)
AAACTATCGGCGCTACGGTATCTTG
NONE
Os.46572.2.S1_x_at--1084--8913Chr10:10757691..10757715 (25 bp)
TGACCTCTCTTACAACAATCTTTCT
NONE
Os.46572.2.S1_x_at--556--10611Chr10:10757712..10757736 (25 bp)
TTCTGGAACTGTAAATCCCTCCGTT
NONE
Os.46572.2.S1_x_at--401--4291Chr10:10757729..10757753 (25 bp)
CCTCCGTTTACAACATGTCGTCAAT
NONE
Os.46572.2.S1_x_at--2--3091Chr10:10757751..10757775 (25 bp)
AATCACATTTCTCGGTTTGGCCAAC
NONE
Os.46572.2.S1_x_at--859--5531Chr10:10757810..10757834 (25 bp)
GAAACACTCTTCCTAACATCCAAGT
NONE
Os.46572.2.S1_x_at--1128--1171Chr10:10757903..10758072 (25 bp)
AGTTCCTAAACTGCACTTTGGCGAA
NONE
Target Sequence 
GGAATCCCATTGTTCTTGGCTAATGCGTCCTCGCTCCGCTATCTTTCCTTGAAGAACAATAGCCTCTATGGGAGCATCCC
TGCAGCACTTTTCAACAGCTCAACCATCAGGGAAATATACCTTGGAGAAAACAATCTTTCTGGTGCAATTCCACCCGTAA
CAATATTCCCTTCCCAGATCACCAACCTTGATCTTACAACGAATAGCCTGACAGGAGGCATACCACCATCTCTAGGGAAT
CTCTCATCGCTTACAGCACTCTTAGCTGCAGAAAACCAGTTGCAGGGAAGTATACCGGATTTTAGTAAACTATCGGCGCT
ACGGTATCTTGACCTCTCTTACAACAATCTTTCTGGAACTGTAAATCCCTCCGTTTACAACATGTCGTCAATCACATTTC
TCGGTTTGGCCAACAACAATCTTGAGGGGATAATGCCTCCTGGTATAGGAAACACTCTTCCTAACATCCAAGTTCTGATT
ATGTCTGACAATCATTTTCATGGAGAAATCCCTAAATCTCTAGCAAATGCTTCCAACATGCAGTTCCTAAACTGCACTTT
GGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46572.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis