Browse Element(s) Details


OsAffx.24234.2.S1_s_at

Description tigr:9630.m01273
TID=OsAffx.24234.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g137809/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13750NANA2+7402713..7410877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g13760OsAffx.24233.1.S1_at11/112+7428762..7429193hypothetical protein
LOC_Os02g13770Os.54067.1.S1_at11/112+7431357..7433852transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g13780OsAffx.24234.2.S1_s_at9/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13780OsAffx.24234.1.S1_x_at4/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13780Os.46572.2.S1_x_at2/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13790NANA2+7449739..7450231hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24234.2.S1_s_at--891--9731Chr02:7434985..7435009 (25 bp)
TCAATGCATCACTTTCACAGATCAA
LOC_Os02g13780
OsAffx.24234.2.S1_s_at--1078--2752Chr10:10760068..10760092 (25 bp)
AAGACATACTTGACCCCAGGCTTAT
NONE
OsAffx.24234.2.S1_s_at--1009--2632Chr10:10760110..10760134 (25 bp)
AACCTTCTAATCATACCCTGCAATT
NONE
OsAffx.24234.2.S1_s_at--275--251Chr02:7434868..7434892 (25 bp)
ATATCTGTGCTCTACAACTCCTTAA
LOC_Os02g13780
OsAffx.24234.2.S1_s_at--943--2511Chr02:7434844..7434868 (25 bp)
AACTTGGCCTGGAATGCTCTGAAGA
LOC_Os02g13780
OsAffx.24234.2.S1_s_at--369--2931Chr02:7434764..7434788 (25 bp)
AAGGAAGCATTTTTCGCCACGAGCA
LOC_Os02g13780
OsAffx.24234.2.S1_s_at--242--10291Chr02:7434753..7434777 (25 bp)
TTTCGCCACGAGCATTTGACGTTAG
LOC_Os02g13780
OsAffx.24234.2.S1_s_at--476--9851Chr02:7434668..7434692 (25 bp)
TAAATTGGTGTCTGCAGCACTGCCG
LOC_Os02g13780
OsAffx.24234.2.S1_s_at--667--1471Chr02:7434653..7434677 (25 bp)
AGCACTGCCGAATTTATCTTCCGAA
LOC_Os02g13780
OsAffx.24234.2.S1_s_at--37--5351Chr02:7434631..7434655 (25 bp)
GAAGTTTCTTGATCACTACAGCAGT
NONE
OsAffx.24234.2.S1_s_at--1033--2691Chr02:7434606..7434630 (25 bp)
AAGCTACAGATGTTTTTGCTGCTAC
NONE
Target Sequence 
TCAATGCATCACTTTCACAGATCAAAGACATACTTGACCCCAGGCTTATTCCTGAAATGACAGAACAACCTTCTAATCAT
ACCCTGCAATTGCATGAACACAAGACAGGTATAATGGATATCTGTGCTCTACAACTCCTTAAACTTGGCCTGGAATGCTC
TGAAGAGTCGCCAAAAGATCGGCCATTGATACATGATGTATATAGTGAGGTAATGTCAATAAAGGAAGCATTTTTCGCCA
CGAGCATTTGACGTTAGGTAATAAAATGGTGTCAATAGAAGTGGAACACTGAGGAATGAAGCATGAACGTTAGGTAATAA
ATTGGTGTCTGCAGCACTGCCGAATTTATCTTCCGAAGTTTCTTGATCACTACAGCAGTAAGCTACAGATGTTTTTGCTG
CTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24234.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis