Browse Element(s) Details


Os.54067.1.S1_at

Description gb:AK101656.1
DB_XREF= gi:32986865
TID=Os.54067.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057F03, full insert sequence.
FL= gb:AK101656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1377011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13750NANA2+7402713..7410877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g13760OsAffx.24233.1.S1_at11/112+7428762..7429193hypothetical protein
LOC_Os02g13770Os.54067.1.S1_at11/112+7431357..7433852transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g13780OsAffx.24234.2.S1_s_at9/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13780OsAffx.24234.1.S1_x_at4/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13780Os.46572.2.S1_x_at2/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13790NANA2+7449739..7450231hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54067.1.S1_at--453--8071Chr02:7433271..7433295 (25 bp)
GGAGCAGAGCAATTGTCAGCCAAGT
LOC_Os02g13770
Os.54067.1.S1_at--22--1251Chr02:7433306..7433330 (25 bp)
AGTTGTTCAACCTTCGTCACTCAAA
LOC_Os02g13770
Os.54067.1.S1_at--899--7091Chr02:7433321..7433345 (25 bp)
GTCACTCAAAGCTGCGCAACAACAT
LOC_Os02g13770
Os.54067.1.S1_at--264--4011Chr02:7433350..7433374 (25 bp)
CGTGCCACAGCGCTATTGAAGATGA
LOC_Os02g13770
Os.54067.1.S1_at--251--5191Chr02:7433512..7433536 (25 bp)
GCAATGCCAGTTTCATCCCGTAGAA
LOC_Os02g13770
Os.54067.1.S1_at--1127--10071Chr02:7433671..7433695 (25 bp)
TAGGTTTCCCTATTCTGAGGCCAAA
LOC_Os02g13770
Os.54067.1.S1_at--79--5911Chr02:7433717..7433741 (25 bp)
GAGCTGCTCATGTGTGATTTGTATC
LOC_Os02g13770
Os.54067.1.S1_at--13--8231Chr02:7433777..7433801 (25 bp)
GGCAATGCCCTGTAGAAGCTGTACT
LOC_Os02g13770
Os.54067.1.S1_at--999--5391Chr02:7433791..7433815 (25 bp)
GAAGCTGTACTCAGTTGACACCCAC
LOC_Os02g13770
Os.54067.1.S1_at--806--1231Chr02:7433803..7433827 (25 bp)
AGTTGACACCCACCAGTAAGATATG
LOC_Os02g13770
Os.54067.1.S1_at--395--1271Chr02:7433821..7433845 (25 bp)
AGATATGGCATTTTCATGTCCTCCA
LOC_Os02g13770
Target Sequence 
GGAGCAGAGCAATTGTCAGCCAAGTGACTACAAGGAGTTGTTCAACCTTCGTCACTCAAAGCTGCGCAACAACATAAAGC
GTGCCACAGCGCTATTGAAGATGAGGTTCCCAATTTTAAATGTCGCAACATTCTATCAGATAGAAACTCAAGCGAAAATC
CCAGCAGCAGCAGTGGTGCTGCACAATATAATGCAGGGCCAAAAAGATGATGATGATGATGATGGGTGGGCATTTAACCA
GGCAATGCCAGTTTCATCCCGTAGAACTGTAGTTTTACCCAGTGGGGATGATGCTTATGGCAATGATGTCGAAGAACTGA
ACAACCAATGTAGCATGGGTGATGCTTTGAGAGATTATATTGCGAAGAAGATGTGGACAGATTATGAAAGGAACAGGAGG
TAGGTTTCCCTATTCTGAGGCCAAACAACATATAGGTGAAAGGAAAGAGCTGCTCATGTGTGATTTGTATCTTGAATTCT
GATGTTTATGGTTAAAGATGGAACTAGGCAATGCCCTGTAGAAGCTGTACTCAGTTGACACCCACCAGTAAGATATGGCA
TTTTCATGTCCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis