Browse Element(s) Details


OsAffx.2597.1.S1_at

Description tigr:9630.m01234
TID=OsAffx.2597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1341011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13360OsAffx.12017.1.S1_at11/112+7126765..7131311expressed protein
LOC_Os02g13370Os.52377.1.S1_s_at11/112+7132009..7133382expressed protein
LOC_Os02g13370Os.52377.1.S1_at7/112+7132009..7133382expressed protein
LOC_Os02g13380Os.4170.1.S1_at8/112+7135189..7138046Early nodulin 93, putative, expressed
LOC_Os02g13390NANA2+7141810..7143857hypothetical protein
LOC_Os02g13400Os.7296.1.S1_at11/112+7144563..7150536Poly polymerase central domain containing protein, expressed
LOC_Os02g13410OsAffx.2597.1.S1_at11/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13410Os.46572.2.S1_x_at1/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13420Os.7123.2.S1_x_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13420Os.7123.2.S1_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13430OsAffx.2598.1.S1_at11/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13430Os.7123.2.S1_x_at1/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13440NANA2+7177378..7178234hypothetical protein
LOC_Os02g13450OsAffx.2599.1.S1_at10/112+7179394..7181309hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2597.1.S1_at--1003--3031Chr02:7155002..7155026 (25 bp)
AATCCTCTACATGCATCACGGTTGT
LOC_Os02g13410
OsAffx.2597.1.S1_at--501--2811Chr02:7154911..7154935 (25 bp)
AAGATCTCTGGCTTCAGTTATGCCC
LOC_Os02g13410
OsAffx.2597.1.S1_at--904--1211Chr02:7154896..7154920 (25 bp)
AGTTATGCCCGGATCAATCTTGCCG
LOC_Os02g13410
OsAffx.2597.1.S1_at--226--6631Chr02:7154858..7154882 (25 bp)
GTTGGGAAACGTCCGTCTTCATGCA
LOC_Os02g13410
OsAffx.2597.1.S1_at--653--7551Chr02:7154833..7154856 (24 bp)
GGGCCTTCGGGTATTTTGCTCCAGA
LOC_Os02g13410
OsAffx.2597.1.S1_at--998--1171Chr02:7154619..7154643 (25 bp)
AGTAGTCAACGATCAGCACGGCCAT
LOC_Os02g13410
OsAffx.2597.1.S1_at--874--791Chr02:7154562..7154586 (25 bp)
ATGGGCACGGCAAGGCTACGACGAT
LOC_Os02g13410
OsAffx.2597.1.S1_at--751--5771Chr02:7154543..7154567 (25 bp)
GACGATAAGTTATTCACCGACGATG
LOC_Os02g13410
OsAffx.2597.1.S1_at--456--6271Chr02:7154522..7154546 (25 bp)
GATGTCCTTGACAACGATATCGCCT
LOC_Os02g13410
OsAffx.2597.1.S1_at--358--3771Chr02:7154499..7154523 (25 bp)
CTCTGACGCGGCACGGTACTTGAAG
LOC_Os02g13410
OsAffx.2597.1.S1_at--965--2691Chr02:7154456..7154480 (25 bp)
AAGCTCGGCGTGGAGTGCACCATGA
LOC_Os02g13410
Target Sequence 
AATCCTCTACATGCATCACGGTTGTCGAAGGCCGATCATTCACGGCGACATCAAGCCGGCCAACATCCTACTTGACGGCA
ACTTCAAGGCCAAGATCTCTGGCTTCAGTTATGCCCGGATCAATCTTGCCGGCCGCAACACGCTGTTGGGAAACGTCCGT
CTTCATGCAGGGGCCTTCGGGTATTTTGCTCCAGAGTATGCGGACACCGAAGTGAGCGAGAAGGTCGACGTGTACAGCTT
TGGCGTCGTCCTGCTGGAGATCGTCACGGGAAAAGTAGTCAACGATCAGCACGGCCATCTGACGACATGGGCAAAAGCCT
ACTTGAATACATGGGCACGGCAAGGCTACGACGATAAGTTATTCACCGACGATGTCCTTGACAACGATATCGCCTCTGAC
GCGGCACGGTACTTGAAGGAGATGAAGGCCGTGTTCAAGCTCGGCGTGGAGTGCACCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis