Browse Element(s) Details


Os.4170.1.S1_at

Description gb:AB018377.1
DB_XREF= gi:3763848
GEN=OsENOD93b
TID=Os.4170.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.4170 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsENOD93b mRNA for early nodulin, complete cds.
PROD=early nodulin
FL= gb:AK120885.1 gb:AK072428.1 gb:AB018377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g133808/11Early nodulin 93, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13330OsAffx.2595.1.S1_at11/112+7111106..7111729Bet v I allergen family protein, putative
LOC_Os02g13340Os.24143.1.A1_at10/112+7115786..7119630pentatricopeptide, putative, expressed
LOC_Os02g13350OsAffx.12016.1.S1_at11/112+7123770..7126123hydrolase, NUDIX family protein, expressed
LOC_Os02g13360OsAffx.12017.1.S1_at11/112+7126765..7131311expressed protein
LOC_Os02g13370Os.52377.1.S1_s_at11/112+7132009..7133382expressed protein
LOC_Os02g13370Os.52377.1.S1_at7/112+7132009..7133382expressed protein
LOC_Os02g13380Os.4170.1.S1_at8/112+7135189..7138046Early nodulin 93, putative, expressed
LOC_Os02g13390NANA2+7141810..7143857hypothetical protein
LOC_Os02g13400Os.7296.1.S1_at11/112+7144563..7150536Poly polymerase central domain containing protein, expressed
LOC_Os02g13410OsAffx.2597.1.S1_at11/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13410Os.46572.2.S1_x_at1/112+7154364..7157124Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4170.1.S1_at--301--7271NONE
GTCCATGAGGCAGTCACGCTGGGAT
NONE
Os.4170.1.S1_at--1123--2571Chr02:7137296..7137320 (25 bp)
AACGCAGCCATATCTGGTACCGTGG
LOC_Os02g13380
Os.4170.1.S1_at--556--7452Chr03:27680560..27680850 (25 bp)
GTGTCCTTCCTTGGGCTAAGGCTAA
NONE
Os.4170.1.S1_at--530--9771Chr02:7136894..7136918 (25 bp)
TAAGGCTAATCTCAACTACACCGCA
LOC_Os02g13380
Os.4170.1.S1_at--193--10171NONE
TATCAGCAGCATGCATCGCTGGCTT
NONE
Os.4170.1.S1_at--897--6451Chr02:7135514..7135538 (25 bp)
GATAAGGCCATTCTACGGAACGCAA
LOC_Os02g13380
Os.4170.1.S1_at--156--2631NONE
AACCTGATGCGCAACTTGTACATAT
NONE
Os.4170.1.S1_at--94--10151Chr02:7135417..7135441 (25 bp)
TATCCATTTCTTCGATAGCAGGCGA
LOC_Os02g13380
Os.4170.1.S1_at--1037--451Chr02:7135368..7135392 (25 bp)
ATCTCTATTATTCCGTTCATCCATG
LOC_Os02g13380
Os.4170.1.S1_at--895--5491Chr02:7135280..7135304 (25 bp)
GAAAACCTAACCTCGCATTGTAAAG
LOC_Os02g13380
Os.4170.1.S1_at--865--10071Chr02:7135253..7135277 (25 bp)
TAGGGCTGTTGCCTTTTAGACCAGT
LOC_Os02g13380
Target Sequence 
GTCCATGAGGCAGTCACGCTGGGATTGAAGAACGCAGCCATATCTGGTACCGTGGTTGCGGTCCCCACGTTGGTTGGTTG
CCGTGTCCTTCCTTGGGCTAAGGCTAATCTCAACTACACCGCACAAGCACTCATCATATCAGCAGCATGCATCGCTGGCT
TCTTCATCACTGCTGATAAGGCCATTCTACGGAACGCAAGACAGAACACCATTGGGAAGATTGACAGGTCAACCTGATGC
GCAACTTGTACATATGAGAACGTTGTACTGATTATCCATTTCTTCGATAGCAGGCGAGGTTGATGGGAGCAATAGGAATC
CATCTCTATTATTCCGTTCATCCATGGATGATTGGACGTGTACTGCAATGAATCAGCAATTTTTATGTTTTAATCTTAAT
TCCTTATATGAAAACCTAACCTCGCATTGTAAAGACTAGGGCTGTTGCCTTTTAGACCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis