Browse Element(s) Details


OsAffx.12251.2.A1_at

Description tigr:9630.m01241
TID=OsAffx.12251.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1348011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13450OsAffx.2599.1.S1_at10/112+7179394..7181309hypothetical protein
LOC_Os02g13460OsAffx.12018.1.S1_at11/112+7183462..7187529Leucine Rich Repeat family protein
LOC_Os02g13470NANA2+7192204..7198866retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g13480OsAffx.12251.2.A1_at11/112+7203990..7204825hypothetical protein
LOC_Os02g13490Os.14491.2.S1_x_at4/112+7206344..7209363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13490Os.47463.1.S1_x_at4/112+7206344..7209363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13500OsAffx.26126.1.S1_at1/112+7215403..7219384Transposable element protein, putative, MuDR
LOC_Os02g13510Os.7123.3.S1_at11/112+7220338..7224467Leucine Rich Repeat family protein, expressed
LOC_Os02g13510Os.7123.2.S1_x_at4/112+7220338..7224467Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12251.2.A1_at--1125--291Chr02:7204541..7204565 (25 bp)
ATAGCTCGCTCTATCAGGCGCGACT
LOC_Os02g13480
OsAffx.12251.2.A1_at--27--10171Chr02:7204530..7204554 (25 bp)
TATCAGGCGCGACTGGCAAATCCAG
LOC_Os02g13480
OsAffx.12251.2.A1_at--889--3911Chr02:7204518..7204542 (25 bp)
CTGGCAAATCCAGCGGTGGGCACGA
LOC_Os02g13480
OsAffx.12251.2.A1_at--875--3331Chr02:7204498..7204522 (25 bp)
CACGACCGACGAATCCGGTGGTGGC
LOC_Os02g13480
OsAffx.12251.2.A1_at--696--4871Chr02:7204361..7204385 (25 bp)
GCTTTGGCCTCCAGGTCGGTGAGCA
LOC_Os02g13480
OsAffx.12251.2.A1_at--570--7751Chr02:7204230..7204254 (25 bp)
GGACACCTCTCCACCGTCTTTAAGT
LOC_Os02g13480
OsAffx.12251.2.A1_at--323--6831Chr02:7204215..7204239 (25 bp)
GTCTTTAAGTCTTCGTCGCCACCGT
LOC_Os02g13480
OsAffx.12251.2.A1_at--545--4611Chr02:7204065..7204089 (25 bp)
GCGAGATCTCGCGTGCTTGGGTCTC
LOC_Os02g13480
OsAffx.12251.2.A1_at--639--7311Chr02:7204053..7204077 (25 bp)
GTGCTTGGGTCTCGCTGCTGACTAC
LOC_Os02g13480
OsAffx.12251.2.A1_at--482--8951Chr02:7204035..7204059 (25 bp)
TGACTACTCTGAGCTTGCCAGCTTG
LOC_Os02g13480
OsAffx.12251.2.A1_at--1014--9191Chr02:7204020..7204044 (25 bp)
TGCCAGCTTGGCTCTCGGAAGAAAT
LOC_Os02g13480
Target Sequence 
ATAGCTCGCTCTATCAGGCGCGACTGGCAAATCCAGCGGTGGGCACGACCGACGAATCCGGTGGTGGCGGTGTCGGACGA
TAGTGGCGTCGGGCGGAACCGGCGGAAGCCTAGGCTGCGCGTCGAGAGTGACCGGCGGCGTGACCCTCTTCTTCCCCATC
GCTGCTCGACCTCGGCTCCCGCTTTGGCCTCCAGGTCGGTGAGCACCTCACGCCGGCCGCTGTCCCTCACGGCGGTGTTC
TCCCTGCTCTCCTCGTCCGCAGGCCTCTCCAAATGCCTCCTCGCCGCCTGCCGCGAGCGCCGCAAGCGGCAGGACACCTC
TCCACCGTCTTTAAGTCTTCGTCGCCACCGTCAGGCCTGCTCGCGCCATGCCGTGCCAGATCCACCGACGCTTGCTCCAC
CACCGAAGCTGTCGAAGCTCGCGGCGGCCATGGATGGATGGACGACCGCCGGTGGCATCGCCGCTACCGCTCCCGCGCGA
GATCTCGCGTGCTTGGGTCTCGCTGCTGACTACTCTGAGCTTGCCAGCTTGGCTCTCGGAAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12251.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis