Browse Element(s) Details


Os.7123.3.S1_at

Description gb:AK111620.1
DB_XREF= gi:37988283
TID=Os.7123.3
CNT=23
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109J03, full insert sequence.
FL= gb:AK111620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1351011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13470NANA2+7192204..7198866retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g13480OsAffx.12251.2.A1_at11/112+7203990..7204825hypothetical protein
LOC_Os02g13490Os.14491.2.S1_x_at4/112+7206344..7209363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13490Os.47463.1.S1_x_at4/112+7206344..7209363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13500OsAffx.26126.1.S1_at1/112+7215403..7219384Transposable element protein, putative, MuDR
LOC_Os02g13510Os.7123.3.S1_at11/112+7220338..7224467Leucine Rich Repeat family protein, expressed
LOC_Os02g13510Os.7123.2.S1_x_at4/112+7220338..7224467Leucine Rich Repeat family protein, expressed
LOC_Os02g13520Os.7355.1.S1_at11/112+7245053..7248668Auxin-responsive protein IAA26, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7123.3.S1_at--540--451Chr02:7220865..7220889 (25 bp)
ATCTCTTTCAATCCTCTTTAATTCC
LOC_Os02g13510
Os.7123.3.S1_at--898--7611Chr02:7220795..7220819 (25 bp)
GGGAACCAACACAAGTCGCTGCTGC
LOC_Os02g13510
Os.7123.3.S1_at--93--3831Chr02:7220774..7220798 (25 bp)
CTGCCATAGCGCATCCGGTTTAAAA
LOC_Os02g13510
Os.7123.3.S1_at--441--9831Chr02:7220754..7220778 (25 bp)
TAAAACCGATGTGACACCTCGCTGT
LOC_Os02g13510
Os.7123.3.S1_at--1060--5611Chr02:7220742..7220766 (25 bp)
GACACCTCGCTGTAAATTATGTACT
LOC_Os02g13510
Os.7123.3.S1_at--508--2871Chr02:7220672..7220696 (25 bp)
AAGTGTGTCCACCATATTTGTGTCC
LOC_Os02g13510
Os.7123.3.S1_at--423--211Chr02:7220657..7220681 (25 bp)
ATTTGTGTCCAATTGCCGAAGGCAT
LOC_Os02g13510
Os.7123.3.S1_at--8--10391Chr02:7220468..7220492 (25 bp)
TTTTCTGCAACATTGTACTTTTGTA
LOC_Os02g13510
Os.7123.3.S1_at--660--31Chr02:7220432..7220456 (25 bp)
ATTGTAGTCTATTTCCTTGCGTTTC
LOC_Os02g13510
Os.7123.3.S1_at--949--6811Chr02:7220412..7220436 (25 bp)
GTTTCTTGGAACATGAGGGCCCGGA
LOC_Os02g13510
Os.7123.3.S1_at--103--11Chr02:7220397..7220421 (25 bp)
AGGGCCCGGACACAATTGTTTGCTT
LOC_Os02g13510
Target Sequence 
ATCTCTTTCAATCCTCTTTAATTCCCTCCAAACCAAATAAGGCCTTAGGGAAGAGAAGGGGTAGGGCAAGGGGAACCAAC
ACAAGTCGCTGCTGCCATAGCGCATCCGGTTTAAAACCGATGTGACACCTCGCTGTAAATTATGTACTTCTACTGTAGAG
TGTGCAGGGAACAAACGGGTTGTGTAAGGGTAAAAGTGTGTCCACCATATTTGTGTCCAATTGCCGAAGGCATAGAAGTA
AAAATAAATTTTGTTTCAGAACGTGATTGTTTTAAGTTATGTTTACTTGTAGAGATGAGTGCTTGAAAATTTCGAATAAA
TTAACATGTTCAAAAATATAGATTTTAGAACCCATTTGAAACAAAGGAAAAATCATATGATTGATGTTTCTCACAATTTT
TCTGCAACATTGTACTTTTGTAAAATCTTAGTAATTGTAGTCTATTTCCTTGCGTTTCTTGGAACATGAGGGCCCGGACA
CAATTGTTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7123.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis