Browse Element(s) Details


Os.24307.1.S1_at

Description gb:AK066849.1
DB_XREF= gi:32976867
TID=Os.24307.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0060I05.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075C23, full insert sequence.
FL= gb:AK066849.1 gb:AK103995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3915011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39130Os.37813.1.S1_at10/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39130Os.16010.1.S1_at1/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39140OsAffx.18575.1.S1_x_at11/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39140Os.39583.1.A1_at10/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39140OsAffx.23696.1.S1_x_at1/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39150Os.24307.1.S1_at11/1110+20563883..20565534expressed protein
LOC_Os10g39160OsAffx.20168.1.S1_at11/1110+20566022..20567148Peroxidase family protein
LOC_Os10g39170Os.5099.1.S1_at11/1110+20570460..20572645Peroxidase family protein, expressed
LOC_Os10g39190OsAffx.30718.1.S1_x_at11/1110+20586477..20587415B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009773biological_processphotosynthetic electron transport in photosystem I
GO:0009941cellular_componentchloroplast envelope
GO:0030093cellular_componentphotosystem I (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24307.1.S1_at--924--4651Chr10:20564232..20564359 (25 bp)
GCGTCCTTCTGCAAGAGGCTGGCGA
LOC_Os10g39150
Os.24307.1.S1_at--284--2611Chr10:20564413..20564437 (25 bp)
AACGCGGAGATCACCGAGTTCATCA
LOC_Os10g39150
Os.24307.1.S1_at--203--6911Chr10:20564612..20564745 (25 bp)
GTATCGGCAATTGACAGGCTTCCTA
LOC_Os10g39150
Os.24307.1.S1_at--483--3171Chr10:20564729..20564753 (25 bp)
AATTGACAGGCTTCCTATCGTTCCT
LOC_Os10g39150
Os.24307.1.S1_at--367--10151Chr10:20564744..20564768 (25 bp)
TATCGTTCCTGGTCTCATGGAAGCT
LOC_Os10g39150
Os.24307.1.S1_at--473--851Chr10:20564760..20564784 (25 bp)
ATGGAAGCTGTTGGCATTGGCTACA
LOC_Os10g39150
Os.24307.1.S1_at--286--8491Chr10:20564777..20565177 (25 bp)
TGGCTACAGCGGGTGGTTTGCATAC
LOC_Os10g39150
Os.24307.1.S1_at--636--10711Chr10:20565170..20565194 (25 bp)
TTGCATACCGGAACCTGCTGTTCAA
LOC_Os10g39150
Os.24307.1.S1_at--936--4471Chr10:20565195..20565313 (25 bp)
GCCTGACAGGGAAGCTTTCTTTGCA
LOC_Os10g39150
Os.24307.1.S1_at--294--9671Chr10:20565342..20565366 (25 bp)
TCAGCGGTTAACAGAGATACTACTT
LOC_Os10g39150
Os.24307.1.S1_at--278--8011Chr10:20565387..20565411 (25 bp)
GGAGGCTGCTACTGGATTAATTATC
LOC_Os10g39150
Target Sequence 
GCGTCCTTCTGCAAGAGGCTGGCGAGGAACGTGGTGGCCATGGCGGCGGGGGAGGCGCCGGCGGCGCCGCTCGCCGCCAA
CGCGGAGATCACCGAGTTCATCAACGCCCTCAAACAAGAGTGGGACAGGATTGAGGACAAGTACGCGGTGACGACGCTGG
CGGTCGCTGCGTCGCTCGGGATGTGGAGCGCCGGCGGAGTTGTATCGGCAATTGACAGGCTTCCTATCGTTCCTGGTCTC
ATGGAAGCTGTTGGCATTGGCTACAGCGGGTGGTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTT
TGCAAAGGTTAGGGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGA
GGCTGCTACTGGATTAATTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis