Browse Element(s) Details


Os.2431.1.S1_at

Description gb:AK106902.1
DB_XREF= gi:32992111
TID=Os.2431.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H09, full insert sequence.
FL= gb:AK106902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1034011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10300OsAffx.31999.3.S1_at11/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10300Os.54112.1.S1_at1/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10310Os.49827.1.S1_at11/1111+5588030..5598545Leucine Rich Repeat family protein, expressed
LOC_Os11g10320OsAffx.7060.1.S1_s_at10/1111+5600720..5602730expressed protein
LOC_Os11g10320Os.7980.1.S1_at3/1111+5600720..5602730expressed protein
LOC_Os11g10330Os.51951.1.S1_at11/1111+5606764..5610537F-box domain containing protein, expressed
LOC_Os11g10340Os.2431.1.S1_at11/1111+5610910..5613865F-box domain containing protein, expressed
LOC_Os11g10350NANA11+5614657..5615475retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10360NANA11+5616833..5618131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10370OsAffx.7062.1.S1_at11/1111+5623357..5624506F-box domain containing protein
LOC_Os11g10384OsAffx.7063.1.S1_at11/1111+5627299..5635856transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2431.1.S1_at--74--2911Chr11:5611206..5611230 (25 bp)
AAGGTCTAAAAACTGGATTGTCCAT
LOC_Os11g10340
Os.2431.1.S1_at--158--51Chr11:5611190..5611214 (25 bp)
ATTGTCCATGGATCTACAGGTCTAA
LOC_Os11g10340
Os.2431.1.S1_at--855--7791Chr11:5611172..5611196 (25 bp)
GGTCTAAAATGGTTTCACCGCGTTG
LOC_Os11g10340
Os.2431.1.S1_at--658--1791Chr11:5611156..5611180 (25 bp)
ACCGCGTTGGTGCTTACTGCTTAAT
LOC_Os11g10340
Os.2431.1.S1_at--255--2911Chr11:5611114..5611138 (25 bp)
AAGGTTGCCATTTTCTGTCTGTAGG
LOC_Os11g10340
Os.2431.1.S1_at--343--10611Chr11:5611102..5611126 (25 bp)
TTCTGTCTGTAGGTGTCATATGTCA
LOC_Os11g10340
Os.2431.1.S1_at--842--7111Chr11:5611081..5611105 (25 bp)
GTCAGTTCCAGTCATATTGACAGTT
LOC_Os11g10340
Os.2431.1.S1_at--829--2851Chr11:5611004..5611028 (25 bp)
AAGTGCAGGTAATCTATGGGTTTCT
LOC_Os11g10340
Os.2431.1.S1_at--885--3051Chr11:5610994..5611018 (25 bp)
AATCTATGGGTTTCTGGTTTGATAA
LOC_Os11g10340
Os.2431.1.S1_at--41--9551Chr11:5610950..5610974 (25 bp)
TCTAGCTCTGTGAACATTGCTCCGT
LOC_Os11g10340
Os.2431.1.S1_at--1083--6851Chr11:5610918..5610942 (25 bp)
GTTTGATAGTATGCACATCTGGTAA
LOC_Os11g10340
Target Sequence 
AAGGTCTAAAAACTGGATTGTCCATGGATCTACAGGTCTAAAATGGTTTCACCGCGTTGGTGCTTACTGCTTAATTTGCT
GTGACAACTGAGAAGGTTGCCATTTTCTGTCTGTAGGTGTCATATGTCAGTTCCAGTCATATTGACAGTTGGAAATATAA
GTCAGAATTTGTAATTGTAGGGCCCTAAAAAAAAGGATTTGGAAGTGCAGGTAATCTATGGGTTTCTGGTTTGATAAATN
TGCTACCTTTAACATNTCTAGCTCTGTGAACATTGCTCCGTNTGAAATGTTTGATAGTATGCACATCTGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis