Browse Element(s) Details


Os.2436.1.S1_at

Description gb:AK102893.1
DB_XREF= gi:32988102
TID=Os.2436.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112N10, full insert sequence.
FL= gb:AK102893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1029010/11D-mannose binding lectin family protein, expressed
LOC_Os11g102804/11D-mannose binding lectin family protein
LOC_Os02g203501/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10250Os.54679.1.S1_at11/1111+5558304..5563759expressed protein
LOC_Os11g10250OsAffx.18779.1.S1_at10/1111+5558304..5563759expressed protein
LOC_Os11g10250Os.52549.1.S1_s_at1/1111+5558304..5563759expressed protein
LOC_Os11g10260NANA11+5564981..5572514retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10270NANA11+5573437..5574183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10280Os.2436.1.S1_at4/1111+5575562..5578033D-mannose binding lectin family protein
LOC_Os11g10290Os.2436.1.S1_at10/1111+5581963..5584666D-mannose binding lectin family protein, expressed
LOC_Os11g10300OsAffx.31999.3.S1_at11/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10300Os.54112.1.S1_at1/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10310Os.49827.1.S1_at11/1111+5588030..5598545Leucine Rich Repeat family protein, expressed
LOC_Os11g10320OsAffx.7060.1.S1_s_at10/1111+5600720..5602730expressed protein
LOC_Os11g10320Os.7980.1.S1_at3/1111+5600720..5602730expressed protein
LOC_Os11g10330Os.51951.1.S1_at11/1111+5606764..5610537F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2436.1.S1_at--611--9952Chr11:5582510..5582534 (25 bp)
TAGTCGGGTTCTAACTACTTTCAGG
LOC_Os11g10290
Os.2436.1.S1_at--231--8992Chr11:5582366..5582390 (25 bp)
TGAAGCATACACAAGCAACCATTAT
LOC_Os11g10290
Os.2436.1.S1_at--1017--7333Chr02:11991604..11991633 (23 bp)
GTGCAGAATTTGCTTGATCCAGAAT
LOC_Os02g20350
Os.2436.1.S1_at--1043--7391Chr11:5582167..5582191 (25 bp)
GTGGTTCGCTTTCTTGAGGGTCTAC
LOC_Os11g10290
Os.2436.1.S1_at--159--7691Chr11:5582150..5582174 (25 bp)
GGGTCTACAGGAGGTTGACATGCCC
LOC_Os11g10290
Os.2436.1.S1_at--340--2752Chr11:5582117..5582141 (25 bp)
AAGACTACTTGCAGCCATAACCGAA
LOC_Os11g10290
Os.2436.1.S1_at--784--2892Chr11:5582093..5582117 (25 bp)
AAGGTCTCATATATAGTTTCAGTGT
LOC_Os11g10290
Os.2436.1.S1_at--595--7071Chr11:5582037..5582061 (25 bp)
GTAATCAGTCTTTTGTTTGAGCAAA
LOC_Os11g10290
Os.2436.1.S1_at--586--9451Chr11:5581991..5582015 (25 bp)
TCTGGCAATTGCTTAGTTTTACTGT
LOC_Os11g10290
Os.2436.1.S1_at--887--10051Chr11:5581978..5582002 (25 bp)
TAGTTTTACTGTGTGGTGCTGGTGA
LOC_Os11g10290
Os.2436.1.S1_at--521--7311Chr11:5581963..5581987 (25 bp)
GTGCTGGTGAGTAATCTCATTTCTT
NONE
Target Sequence 
TAGTCGGGTTCTAACTACTTTCAGGGGAACTAAAGGGTATCTTGNCCCAGAGTGGCTTANCGGAGTCGCTATTACTCCAN
AAAGTTGATGTTNACANGTTTTGGTATGGTACTNCTAGAAATCATATCAGGAAGAAGGAATTTATCTGAAGCATACACAA
GCAACCATTATCATTTTGATTATTTTCCNGTGCAAGCCATCAGCAAACTTCATGAGGGAAGTGTGCAGAATTTGCTTGAT
CCAGAATTACANTGGTGATTTCNATTTGGAAGAGGCTGAAAGAGTTTGTAAAGTTGCATGTTGGTGCATTCAAGAAGATG
AAATTGATAGGCCAACAATGGGTGAAGTGGTTCGCTTTCTTGAGGGTCTACAGGAGGTTGACATGCCCCCCATGCCAAGA
CTACTTGCAGCCATAACCGAAAGGTCTCATATATAGTTTCAGTGTTGTAATATTTCATAAATACTTTGTATTCAATGTAA
TCAGTCTTTTGTTTGAGCAAATTGAAAGTTCCAATGTAATAATCTGGCAATTGCTTAGTTTTACTGTGTGGTGCTGGTGA
GTAATCTCATTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis