Browse Element(s) Details


Os.2444.1.S1_at

Description gb:AK120290.1
DB_XREF= gi:37989913
TID=Os.2444.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.2444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050F18, full insert sequence.
FL= gb:AK120290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1010011/11mitogen-activated kinase kinase kinase alpha, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10080OsAffx.18776.1.S1_at11/1111+5432352..5432888hypothetical protein
LOC_Os11g10090Os.52659.1.S1_at11/1111+5437370..5444022transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g10100Os.2444.1.S1_at11/1111+5455747..5460113mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os11g10110OsAffx.18777.1.S1_at11/1111+5460333..5461773expressed protein
LOC_Os11g10110OsAffx.18777.1.S1_s_at10/1111+5460333..5461773expressed protein
LOC_Os11g10120Os.52285.1.S1_at10/1111+5462979..5464738expressed protein
LOC_Os11g10130OsAffx.7057.1.S1_at11/1111+5475121..5478466Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2444.1.S1_at--72--2151Chr11:5459232..5459256 (25 bp)
ACACGTTTCCAACTTCCTTTGATGG
LOC_Os11g10100
Os.2444.1.S1_at--555--2491Chr11:5459491..5459515 (25 bp)
AACAGAAGCTTATCTCCTCTACGAG
LOC_Os11g10100
Os.2444.1.S1_at--239--10491Chr11:5459539..5459563 (25 bp)
TTACAAGTACCAACATCTGCCATTC
LOC_Os11g10100
Os.2444.1.S1_at--751--10611Chr11:5459565..5459589 (25 bp)
TTCGATTTCAACTCGCAGGATCTCT
LOC_Os11g10100
Os.2444.1.S1_at--887--771Chr11:5459687..5459711 (25 bp)
ATGTGCGTATGAACATGTCCCTGCC
LOC_Os11g10100
Os.2444.1.S1_at--144--131Chr11:5459733..5459757 (25 bp)
ATTACGGCAGTACCGGCAGTCGAAT
LOC_Os11g10100
Os.2444.1.S1_at--554--9691Chr11:5459822..5459846 (25 bp)
TCAACAATGCACTCTACCCAAAAAG
LOC_Os11g10100
Os.2444.1.S1_at--889--1371Chr11:5459845..5459869 (25 bp)
AGACCAAGCAACCATGTTCCAGATC
LOC_Os11g10100
Os.2444.1.S1_at--793--3491Chr11:5459870..5459894 (25 bp)
CATGGCTCGAAATCTCTCAACTGAA
LOC_Os11g10100
Os.2444.1.S1_at--26--10311Chr11:5460016..5460040 (25 bp)
TTTCTGTATGTATCTTTTTCCCCTC
LOC_Os11g10100
Os.2444.1.S1_at--116--651Chr11:5460044..5460068 (25 bp)
ATGCAGTTGCATCGCCATTGTACAA
LOC_Os11g10100
Target Sequence 
ACACGTTTCCAACTTCCTTTGATGGAAAAGGCGCCATGGTACAGACAAGCAACAGAAGCTTATCTCCTCTACGAGATCCA
GACCTGACGATGAGAAACTTACAAGTACCAACATCTGCCATTCCTTCGATTTCAACTCGCAGGATCTCTGCCATCAACCC
ATCCAATGTGCGTATGAACATGTCCCTGCCCGTGTCACCTTGCTCTAGCCCATTACGGCAGTACCGGCAGTCGAATCGGA
GTTGCATGCCGTCGCCTCCTCATCCAGCCTATTCAGCTGGAGCAGCTAACTACAGCCCTATCAACAATGCACTCTACCCA
AAAAGACCAAGCAACCATGTTCCAGATCCATGGCTCGAAATCTCTCAACTGAAAGCACCACCATTTGATTCTCCAAGAAG
ATTGTAGAAAACCCAAACACACTTTGTATACAGGAATGAAAGATGTTCCATAAGTTAGAAGACCAAAGGGGGTTCCTTTT
TTTCTGTTTCACCCTTTCTGTATGTATCTTTTTCCCCTCAGGATGCAGTTGCATCGCCATTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis