Browse Element(s) Details


Os.24550.1.S1_at

Description gb:AK102218.1
DB_XREF= gi:32987427
TID=Os.24550.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full insert sequence.
FL= gb:AK063754.1 gb:AK102218.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5716011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57120Os.141.1.S1_at11/113+32505395..32508261Ferredoxin-NADP reductase, root isozyme, chloroplast precursor, putative, expressed
LOC_Os03g57130OsAffx.26384.5.S1_x_at11/113+32508990..32514958Cell differentiation protein rcd1, putative, expressed
LOC_Os03g57140Os.6875.1.S1_at11/113+32520911..32523519expressed protein
LOC_Os03g57160Os.24550.1.S1_at11/113+32530682..32537963expressed protein
LOC_Os03g57170Os.49156.1.S1_at10/113+32538196..32541150LEM3 family/CDC50 family protein, expressed
LOC_Os03g57180OsAffx.25741.1.S1_at11/113+32542335..32542706hypothetical protein
LOC_Os03g57190Os.19844.1.S1_at11/113+32553330..32557193TCP family transcription factor containing protein, expressed
LOC_Os03g57200Os.12200.1.S1_s_at11/113+32558178..32559224glutathione S-transferase GSTU1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24550.1.S1_at--1144--2811Chr03:32531450..32531474 (25 bp)
AAGTAGTTCACCACTTTCTGGCTGG
LOC_Os03g57160
Os.24550.1.S1_at--270--411Chr03:32531373..32531397 (25 bp)
ATCATGCTATGCGATCTGATTCCGC
LOC_Os03g57160
Os.24550.1.S1_at--751--6571Chr03:32531356..32531380 (25 bp)
GATTCCGCAGCCTCGTTATATATGG
LOC_Os03g57160
Os.24550.1.S1_at--869--9791Chr03:32531123..32531147 (25 bp)
TAACCACAAGCTCGCCAGAAGGGCA
LOC_Os03g57160
Os.24550.1.S1_at--269--2291Chr03:32531077..32531101 (25 bp)
AAATGCTGATTTGAGGCCCTTCCAC
LOC_Os03g57160
Os.24550.1.S1_at--589--611Chr03:32531050..32531074 (25 bp)
ATGCTAGCCTTTACTAATCACCCAA
LOC_Os03g57160
Os.24550.1.S1_at--156--7051Chr03:32530940..32530964 (25 bp)
GTAACATTCGCCAGAGATCCAATTT
LOC_Os03g57160
Os.24550.1.S1_at--1079--3111Chr03:32530920..32530944 (25 bp)
AATTTGGCACATCGAGGAGCGTATT
LOC_Os03g57160
Os.24550.1.S1_at--804--10431Chr03:32530875..32530899 (25 bp)
TTATGTTGGGTTGGACATCATCCCC
LOC_Os03g57160
Os.24550.1.S1_at--333--10491Chr03:32530790..32530814 (25 bp)
TTACACCGTGTGACCTATATAGTTG
LOC_Os03g57160
Os.24550.1.S1_at--764--6551Chr03:32530691..32530715 (25 bp)
GATTCAATGAAGTTGTCCCCAGATT
LOC_Os03g57160
Target Sequence 
AAGTAGTTCACCACTTTCTGGCTGGCAATTAACAGTTGATGCACTTGACACATTCCANTCTCTTGGTCAAGCTCAAAATC
ATGCTATGCGATCTGATTCCGCAGCCTCGTTATATATGGATGATCATGTAACTCCTAACCACAAGCTCGCCAGAAGGGCA
TCAGTGAGCAGAAGCCATGGGAAATGCTGATTTGAGGCCCTTCCACGCATGCTAGCCTTTACTAATCACCCAAGTTTGCA
GCAATACTATACCAGTAATTTCACAGCTTATCCGAATCAAAAAGAAAAAAAANTAAAGACNCAGCTTNTCAATCATAAGT
AACATTCGCCAGAGATCCAATTTGGCACATCGAGGAGCGTATTTACATGTAATTCTTTNTGAATTATGTTGGGTTGGACA
TCATCCCCANTATGTTGCGCTGCCCATGATCAGACAGGATAAACCGGCTAATTAATAATCCATGTTAGTTACACCGTGTG
ACCTATATAGTTGTTGCTCAGAAACCGGCAATTTGATGTGGTGTCCAAACGATAATATNATAGTACTGTATTTATTNTGA
AAGAGTCGATTCAATGAAGTTGTCCCCAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis