Browse Element(s) Details


Os.141.1.S1_at

Description gb:D17410.1
DB_XREF= gi:397841
TID=Os.141.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.141 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ferredoxin-NADP+ reductase, complete cds.
PROD=ferredoxin-NADP+ reductase
FL= gb:AK103965.1 gb:AK070598.1 gb:D17410.1 gb:D12815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5712011/11Ferredoxin-NADP reductase, root isozyme, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57080OsAffx.13519.1.S1_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57080OsAffx.13519.1.S1_x_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57090OsAffx.22655.1.S1_at10/113+32490276..32493417transmembrane ARV1-like family protein, putative
LOC_Os03g57100Os.7300.1.S1_at11/113+32493480..32499105Serologically defined breast cancer antigen NY-BR-84, putative, expressed
LOC_Os03g57110Os.20638.1.S2_at11/113+32499285..32504041expressed protein
LOC_Os03g57110Os.20638.1.S1_at11/113+32499285..32504041expressed protein
LOC_Os03g57120Os.141.1.S1_at11/113+32505395..32508261Ferredoxin-NADP reductase, root isozyme, chloroplast precursor, putative, expressed
LOC_Os03g57130OsAffx.26384.5.S1_x_at11/113+32508990..32514958Cell differentiation protein rcd1, putative, expressed
LOC_Os03g57140Os.6875.1.S1_at11/113+32520911..32523519expressed protein
LOC_Os03g57160Os.24550.1.S1_at11/113+32530682..32537963expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.141.1.S1_at--254--8491Chr03:32506196..32506220 (25 bp)
TGGCTCTTCCTTGGTGTGGCTAACA
LOC_Os03g57120
Os.141.1.S1_at--465--2751Chr03:32505856..32505880 (25 bp)
AAGAACGCTGGCAAGATGTATGTCC
LOC_Os03g57120
Os.141.1.S1_at--629--2691Chr03:32505796..32505820 (25 bp)
AAGCTCTTGGATGGCGGCGCGCACA
LOC_Os03g57120
Os.141.1.S1_at--113--4591Chr03:32505778..32505802 (25 bp)
GCGCACATCTACTTCTGTGGTTTGA
LOC_Os03g57120
Os.141.1.S1_at--936--6351Chr03:32505746..32505770 (25 bp)
GATGCCTGGGATTCAAGACACCCTC
LOC_Os03g57120
Os.141.1.S1_at--1036--1471Chr03:32505657..32505681 (25 bp)
AGCAATGGCACGTTGAGGTCTACTA
LOC_Os03g57120
Os.141.1.S1_at--551--7791Chr03:32505641..32505665 (25 bp)
GGTCTACTAGGATCTAAGTGTCCAA
LOC_Os03g57120
Os.141.1.S1_at--412--3571Chr03:32505494..32505518 (25 bp)
CATAAGCTTCTGCATCACATGATGA
LOC_Os03g57120
Os.141.1.S1_at--655--5391Chr03:32505462..32505486 (25 bp)
GAAGCATGTAACTTTTGCCTGTCAC
LOC_Os03g57120
Os.141.1.S1_at--1150--10691Chr03:32505448..32505472 (25 bp)
TTGCCTGTCACTATTGCAGCTGGTA
LOC_Os03g57120
Os.141.1.S1_at--1022--9031Chr03:32505434..32505458 (25 bp)
TGCAGCTGGTACCTTTGCTATCTAC
LOC_Os03g57120
Target Sequence 
TGGCTCTTCCTTGGTGTGGCTAACACTGACAGCCTTCTCTATGATGAAGAGTTCACAAGCTACCTTAAGCAGTATCCAGA
CAATTTCAGGTATGACAAAGCGCTAAGCAGGGAGCAGAAAAACAAGAACGCTGGCAAGATGTATGTCCAGGACAAGATCG
AGGAGTACAGCGACGAGATCTTCAAGCTCTTGGATGGCGGCGCGCACATCTACTTCTGTGGTTTGAAGGGGATGATGCCT
GGGATTCAAGACACCCTCAAGAAAGTGGCGGAGCAGAGAGGGGAGAGCTGGGAGCAGAAGCTATCCCAGCTCAAGAAGAA
CAAGCAATGGCACGTTGAGGTCTACTAGGATCTAAGTGTCCAAGGATTATGATTGTTGCGCAGTGAAAAAGAGAAAACAA
AACGCATGATCTGATGATTCTTGTAGGGTGGTGTAAAATCATCATTTTTTTTCTGAATATGAATCATAAAATCACCCATG
TAATTCATAAGCTTCTGCATCACATGATGAACGAAAGGAAGCATGTAACTTTTGCCTGTCACTATTGCAGCTGGTACCTT
TGCTATCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis