Browse Element(s) Details


Os.20638.1.S2_at

Description gb:AK108472.1
DB_XREF= gi:32993681
TID=Os.20638.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myosin heavy chain (OSJNBb0093E13.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-E07, full insert sequence.
FL= gb:AK109744.1 gb:AK108472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5711011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57070Os.26836.1.S1_a_at11/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57070Os.26836.4.S1_x_at10/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57080OsAffx.13519.1.S1_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57080OsAffx.13519.1.S1_x_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57090OsAffx.22655.1.S1_at10/113+32490276..32493417transmembrane ARV1-like family protein, putative
LOC_Os03g57100Os.7300.1.S1_at11/113+32493480..32499105Serologically defined breast cancer antigen NY-BR-84, putative, expressed
LOC_Os03g57110Os.20638.1.S2_at11/113+32499285..32504041expressed protein
LOC_Os03g57110Os.20638.1.S1_at11/113+32499285..32504041expressed protein
LOC_Os03g57120Os.141.1.S1_at11/113+32505395..32508261Ferredoxin-NADP reductase, root isozyme, chloroplast precursor, putative, expressed
LOC_Os03g57130OsAffx.26384.5.S1_x_at11/113+32508990..32514958Cell differentiation protein rcd1, putative, expressed
LOC_Os03g57140Os.6875.1.S1_at11/113+32520911..32523519expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20638.1.S2_at--1145--7591Chr03:32499803..32500065 (25 bp)
GGGCAACTAGTGCAGGCATGCTCAA
LOC_Os03g57110
Os.20638.1.S2_at--522--5711Chr03:32499773..32499797 (25 bp)
GACTCATGAGGACCTACTGCCAGGA
LOC_Os03g57110
Os.20638.1.S2_at--918--2551Chr03:32499742..32499766 (25 bp)
AACTGACACACTGATATCCTGGCTC
LOC_Os03g57110
Os.20638.1.S2_at--1037--9611Chr03:32499719..32499743 (25 bp)
TCATCCGCTCATGTGCATAACCAAT
LOC_Os03g57110
Os.20638.1.S2_at--162--4431Chr03:32499692..32499716 (25 bp)
GCCATGTGAAGCTCCAGTTGTAGAT
LOC_Os03g57110
Os.20638.1.S2_at--664--10771Chr03:32499617..32499641 (25 bp)
TTGATGCGTATTTCGAACCAGCTGA
LOC_Os03g57110
Os.20638.1.S2_at--787--6951Chr03:32499591..32499615 (25 bp)
GTAGCACTCACCTTCTGATATGCAG
LOC_Os03g57110
Os.20638.1.S2_at--982--5951Chr03:32499472..32499496 (25 bp)
GAGAATAATTATCAGCCAGTGGCCT
LOC_Os03g57110
Os.20638.1.S2_at--1090--9851Chr03:32499433..32499457 (25 bp)
TACACTGTTCAGGTCTTTGGGTAGA
LOC_Os03g57110
Os.20638.1.S2_at--102--10111Chr03:32499403..32499427 (25 bp)
TAGGCGCATCTTTGTTTAGCCAGAT
LOC_Os03g57110
Os.20638.1.S2_at--820--2171Chr03:32499378..32499402 (25 bp)
ACACGTTTTGTAATCATCCACTATG
LOC_Os03g57110
Target Sequence 
GGGCAACTAGTGCAGGCATGCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACAACTGACACACTGATATCC
TGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAA
TTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACTCACCTTCTGATATGCAGCTA
TATATATACACGTTCAGAAAATAGCTCCATGTAGTGTTTGTAGGTCATGCAGTTATACGTACAAGCCAGAAACTCAGAAC
GACATTCTGTAGAGAATAATTATCAGCCAGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGA
TAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20638.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis