Browse Element(s) Details


Os.26836.1.S1_a_at

Description gb:AK067337.1
DB_XREF= gi:32977355
TID=Os.26836.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0093E13.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102O14, full insert sequence.
FL= gb:AK067337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5707011/11amine oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57030OsAffx.25740.1.S1_at11/113+32448983..32449516hypothetical protein
LOC_Os03g57040Os.13416.1.S1_at9/113+32452556..32454816Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
LOC_Os03g57050OsAffx.10424.1.S1_at11/113+32462620..32463780expressed protein
LOC_Os03g57060OsAffx.13518.1.S1_x_at11/113+32465121..32465438expressed protein
LOC_Os03g57070Os.26836.1.S1_a_at11/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57070Os.26836.4.S1_x_at10/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57080OsAffx.13519.1.S1_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57080OsAffx.13519.1.S1_x_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57090OsAffx.22655.1.S1_at10/113+32490276..32493417transmembrane ARV1-like family protein, putative
LOC_Os03g57100Os.7300.1.S1_at11/113+32493480..32499105Serologically defined breast cancer antigen NY-BR-84, putative, expressed
LOC_Os03g57110Os.20638.1.S2_at11/113+32499285..32504041expressed protein
LOC_Os03g57110Os.20638.1.S1_at11/113+32499285..32504041expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26836.1.S1_a_at--556--8971Chr03:32476511..32476535 (25 bp)
TGAAAGCTTCATCCAGGGTCCCAAC
LOC_Os03g57070
Os.26836.1.S1_a_at--1123--9211Chr03:32476522..32476546 (25 bp)
TCCAGGGTCCCAACTGAATCGAAGT
LOC_Os03g57070
Os.26836.1.S1_a_at--134--9011Chr03:32476536..32476560 (25 bp)
TGAATCGAAGTACGCTACGCTGCTC
LOC_Os03g57070
Os.26836.1.S1_a_at--1122--2831Chr03:32476543..32476567 (25 bp)
AAGTACGCTACGCTGCTCACAACAG
LOC_Os03g57070
Os.26836.1.S1_a_at--677--4851Chr03:32476549..32476573 (25 bp)
GCTACGCTGCTCACAACAGTCACAG
LOC_Os03g57070
Os.26836.1.S1_a_at--17--9711Chr03:32476559..32476583 (25 bp)
TCACAACAGTCACAGCAGATGCATG
LOC_Os03g57070
Os.26836.1.S1_a_at--264--9691Chr03:32476568..32476592 (25 bp)
TCACAGCAGATGCATGGTCCTGGCA
LOC_Os03g57070
Os.26836.1.S1_a_at--877--8471Chr03:32476596..32476620 (25 bp)
TGGCGTACGTGTGGCCACCCAATCA
LOC_Os03g57070
Os.26836.1.S1_a_at--973--9931Chr03:32476601..32476625 (25 bp)
TACGTGTGGCCACCCAATCATATAT
LOC_Os03g57070
Os.26836.1.S1_a_at--562--7551Chr03:32476606..32476630 (25 bp)
GTGGCCACCCAATCATATATATCTA
LOC_Os03g57070
Os.26836.1.S1_a_at--600--9592Chr03:32476618..32476642 (25 bp)
TCATATATATCTATCAACCTGTCAA
LOC_Os03g57070
Target Sequence 
TGAAAGCTTCATCCAGGGTCCCAACTGAATCGAAGTACGCTACGCTGCTCACAACAGTCACAGCAGATGCATGGTCCTGG
CATGGTGGCGTACGTGTGGCCACCCAATCATATATATCTATCAACCTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26836.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis