Browse Element(s) Details


OsAffx.10424.1.S1_at

Description tigr:9631.m05597
TID=OsAffx.10424.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5705011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57030OsAffx.25740.1.S1_at11/113+32448983..32449516hypothetical protein
LOC_Os03g57040Os.13416.1.S1_at9/113+32452556..32454816Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
LOC_Os03g57050OsAffx.10424.1.S1_at11/113+32462620..32463780expressed protein
LOC_Os03g57060OsAffx.13518.1.S1_x_at11/113+32465121..32465438expressed protein
LOC_Os03g57070Os.26836.1.S1_a_at11/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57070Os.26836.4.S1_x_at10/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57080OsAffx.13519.1.S1_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57080OsAffx.13519.1.S1_x_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10424.1.S1_at--63--3091Chr03:32463211..32463235 (25 bp)
AATCACAAACACATGTCGCGCGAAC
LOC_Os03g57050
OsAffx.10424.1.S1_at--33--6711Chr03:32463241..32463265 (25 bp)
GTTCCGTTGCTTCGTGGTGGAATCC
LOC_Os03g57050
OsAffx.10424.1.S1_at--823--5411Chr03:32463272..32463296 (25 bp)
GAAGCGCTGCTCATCTTCAAGATGG
LOC_Os03g57050
OsAffx.10424.1.S1_at--837--7771Chr03:32463410..32463434 (25 bp)
GGTGCATATCCATCAACGCGGATAA
LOC_Os03g57050
OsAffx.10424.1.S1_at--917--2611Chr03:32463454..32463478 (25 bp)
AACCGAATCTACTACCAGGAGCGCG
LOC_Os03g57050
OsAffx.10424.1.S1_at--543--3311Chr03:32463486..32463510 (25 bp)
CACATCCGCGGACATCTACATGTAT
LOC_Os03g57050
OsAffx.10424.1.S1_at--407--9451Chr03:32463539..32463563 (25 bp)
TCGGCGGAGCCATAGATTCGTTGAA
LOC_Os03g57050
OsAffx.10424.1.S1_at--859--10531Chr03:32463595..32463619 (25 bp)
TTCAGTCCAATTCAGCTCTTCTGCA
LOC_Os03g57050
OsAffx.10424.1.S1_at--710--5371Chr03:32463631..32463655 (25 bp)
GAAGCACTGAGGTTCCGACTGGAGT
LOC_Os03g57050
OsAffx.10424.1.S1_at--427--2251Chr03:32463662..32463686 (25 bp)
AAATAGTGCAAAGCCTCCCTGAGCG
LOC_Os03g57050
OsAffx.10424.1.S1_at--588--10431Chr03:32463701..32463725 (25 bp)
TTATGGCTTCCATGGGTGCTGACCT
LOC_Os03g57050
Target Sequence 
AATCACAAACACATGTCGCGCGAACCCCGCGTTCCGTTGCTTCGTGGTGGAATCCGCGGGGGAAGCGCTGCTCATCTTCA
AGATGGACAGAAAGATCGTGCAGATTTACAAGATGAGCACGGGAGGGGTGAAGGAGATCGATCGCTGGAGGAGGTGAAGA
GCATCGGCGGCGGCCGCGCCATCTTCGTCGGCGCCACCAGGTGCATATCCATCAACGCGGATAAGTTCAACGCCATTGAT
GGCAACCGAATCTACTACCAGGAGCGCGACGACCTCACATCCGCGGACATCTACATGTATGAACTCGAGAGCGAGGAGAC
GACCAAGATCGGCGGAGCCATAGATTCGTTGAATCCCGTCTTCCTCGTTTCTACTGAACCTCCTTTCAGTCCAATTCAGC
TCTTCTGCAGCTACGCCGACGAAGCACTGAGGTTCCGACTGGAGTGGGAGAAAATAGTGCAAAGCCTCCCTGAGCGGCTT
CCTGATGACATTATGGCTTCCATGGGTGCTGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis