Browse Element(s) Details


OsAffx.25740.1.S1_at

Description gb:NM_185014.1
DB_XREF= gi:34897113
TID=OsAffx.25740.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0093E13.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5703011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57020NANA3+32424108..32424651hypothetical protein
LOC_Os03g57030OsAffx.25740.1.S1_at11/113+32448983..32449516hypothetical protein
LOC_Os03g57040Os.13416.1.S1_at9/113+32452556..32454816Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
LOC_Os03g57050OsAffx.10424.1.S1_at11/113+32462620..32463780expressed protein
LOC_Os03g57060OsAffx.13518.1.S1_x_at11/113+32465121..32465438expressed protein
LOC_Os03g57070Os.26836.1.S1_a_at11/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57070Os.26836.4.S1_x_at10/113+32471219..32479112amine oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25740.1.S1_at--1108--8531Chr03:32449447..32449471 (25 bp)
TGGAGCTCCCCATGGCCAAGACAAG
LOC_Os03g57030
OsAffx.25740.1.S1_at--899--4791Chr03:32449443..32449467 (25 bp)
GCTCCCCATGGCCAAGACAAGATCT
LOC_Os03g57030
OsAffx.25740.1.S1_at--537--7571Chr03:32449402..32449426 (25 bp)
GGGCTCCACGAAGAGTGGTTTGCTC
LOC_Os03g57030
OsAffx.25740.1.S1_at--648--1851Chr03:32449395..32449419 (25 bp)
ACGAAGAGTGGTTTGCTCAGCTAGC
LOC_Os03g57030
OsAffx.25740.1.S1_at--946--1091Chr03:32449389..32449413 (25 bp)
AGTGGTTTGCTCAGCTAGCTGGGAA
LOC_Os03g57030
OsAffx.25740.1.S1_at--203--9671Chr03:32449379..32449403 (25 bp)
TCAGCTAGCTGGGAAGACGGGACAC
LOC_Os03g57030
OsAffx.25740.1.S1_at--1031--4311Chr03:32449287..32449311 (25 bp)
CCTTGACGCACGCCGCTGAGCTAGG
LOC_Os03g57030
OsAffx.25740.1.S1_at--774--8312Chr05:11676456..11676476 (21 bp)
GGCTCAGCCCAGATCCAGCCAAGGG
NONE
OsAffx.25740.1.S1_at--855--7631Chr03:32449052..32449076 (25 bp)
GGGACCGAATTCGAACTCGACAGCG
LOC_Os03g57030
OsAffx.25740.1.S1_at--572--10611Chr03:32449043..32449067 (25 bp)
TTCGAACTCGACAGCGTCGGATCTA
LOC_Os03g57030
OsAffx.25740.1.S1_at--1041--2151Chr03:32449033..32449057 (25 bp)
ACAGCGTCGGATCTAGCCATCGTCA
LOC_Os03g57030
Target Sequence 
TGGAGCTCCCCATGGCCAAGACAAGATCTGGCCATAGGAGAGGAGGGGCTCCACGAAGAGTGGTTTGCTCAGCTAGCTGG
GAAGACGGGACACCACCACCGCCAACCGCTTCCCCGCGCACACCACCAGGCCAGAGAGAGGCAGCTCCTCCCCCATGCGC
CCTTGACGCACGCCGCTGAGCTAGGGGTGACAACTCCTCCCCTCGCCGCCGCGGTCCCCGCTGCTCGATCCTCGGGCCAC
CGCCTCCACGTGGCCCTCACGCCGCGGCAGCCGCCGCCACCTCCGCGCGGCCCTTGCGCCGCGGCCACTGCCTCTGAGCG
GCCCTCTCACCGCCGCCTCCGCCACCGCGCCGCGCCACTACCGACCCGCGCGGCTCAGCCCAGATCCAGCCAAGGGGGAC
CGAATTCGAACTCGACAGCGTCGGATCTAGCCATCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis