Browse Element(s) Details


OsAffx.13518.1.S1_x_at

Description gb:NM_185017.1
DB_XREF= gi:34897119
TID=OsAffx.13518.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0093E13.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5706011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57030OsAffx.25740.1.S1_at11/113+32448983..32449516hypothetical protein
LOC_Os03g57040Os.13416.1.S1_at9/113+32452556..32454816Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
LOC_Os03g57050OsAffx.10424.1.S1_at11/113+32462620..32463780expressed protein
LOC_Os03g57060OsAffx.13518.1.S1_x_at11/113+32465121..32465438expressed protein
LOC_Os03g57070Os.26836.1.S1_a_at11/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57070Os.26836.4.S1_x_at10/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57080OsAffx.13519.1.S1_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57080OsAffx.13519.1.S1_x_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57090OsAffx.22655.1.S1_at10/113+32490276..32493417transmembrane ARV1-like family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13518.1.S1_x_at--997--7153Chr11:23302271..23302291 (21 bp)
GTCTCGACGACGACGGCGCACGGCG
NONE
OsAffx.13518.1.S1_x_at--355--3931Chr03:32465319..32465343 (25 bp)
CGGCCGCCGCGCTCTGGATGAGTAC
LOC_Os03g57060
OsAffx.13518.1.S1_x_at--802--691Chr03:32465302..32465326 (25 bp)
ATGAGTACAGGAGCGTGCTGCGCGT
LOC_Os03g57060
OsAffx.13518.1.S1_x_at--959--1631Chr03:32465291..32465315 (25 bp)
AGCGTGCTGCGCGTGATCGTACCCT
LOC_Os03g57060
OsAffx.13518.1.S1_x_at--509--9151Chr03:32465284..32465308 (25 bp)
TGCGCGTGATCGTACCCTTGGAGGT
LOC_Os03g57060
OsAffx.13518.1.S1_x_at--215--511Chr03:32465276..32465300 (25 bp)
ATCGTACCCTTGGAGGTGGCCGGAG
LOC_Os03g57060
OsAffx.13518.1.S1_x_at--485--1651Chr03:32465253..32465277 (25 bp)
AGCGCCATCGTCTGGGTCGTTGGAC
LOC_Os03g57060
OsAffx.13518.1.S1_x_at--391--4431Chr03:32465250..32465274 (25 bp)
GCCATCGTCTGGGTCGTTGGACGAC
LOC_Os03g57060
OsAffx.13518.1.S1_x_at--587--4211Chr03:32465203..32465227 (25 bp)
CCGACCTGCCGGAGTTTGGAGCTGC
LOC_Os03g57060
OsAffx.13518.1.S1_x_at--1146--1751Chr03:32465200..32465224 (25 bp)
ACCTGCCGGAGTTTGGAGCTGCGCC
LOC_Os03g57060
OsAffx.13518.1.S1_x_at--702--7291Chr03:32465151..32465175 (25 bp)
GTGCGGCGGCGATGAAGTTGACTGC
LOC_Os03g57060
Target Sequence 
GTCTCGACGACGACGGCGCACGGCGTCGCCGTCGGCCGCCGCGCTCTGGATGAGTACAGGAGCGTGCTGCGCGTGATCGT
ACCCTTGGAGGTGGCCGGAGCGCCATCGTCTGGGTCGTTGGACGACGACGCGGCGGCGGCTCTCGGCCCCGACCTGCCGG
AGTTTGGAGCTGCGCCGGCGGCTGGCCCCGCCGCGGCGGCGTGCGGCGGCGATGAAGTTGACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13518.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis