Browse Element(s) Details


OsAffx.22655.1.S1_at

Description gb:NM_185020.1
DB_XREF= gi:34897125
TID=OsAffx.22655.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0093E13.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5709010/11transmembrane ARV1-like family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57060OsAffx.13518.1.S1_x_at11/113+32465121..32465438expressed protein
LOC_Os03g57070Os.26836.1.S1_a_at11/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57070Os.26836.4.S1_x_at10/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57080OsAffx.13519.1.S1_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57080OsAffx.13519.1.S1_x_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57090OsAffx.22655.1.S1_at10/113+32490276..32493417transmembrane ARV1-like family protein, putative
LOC_Os03g57100Os.7300.1.S1_at11/113+32493480..32499105Serologically defined breast cancer antigen NY-BR-84, putative, expressed
LOC_Os03g57110Os.20638.1.S2_at11/113+32499285..32504041expressed protein
LOC_Os03g57110Os.20638.1.S1_at11/113+32499285..32504041expressed protein
LOC_Os03g57120Os.141.1.S1_at11/113+32505395..32508261Ferredoxin-NADP reductase, root isozyme, chloroplast precursor, putative, expressed
LOC_Os03g57130OsAffx.26384.5.S1_x_at11/113+32508990..32514958Cell differentiation protein rcd1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22655.1.S1_at--112--1011Chr03:32492666..32492690 (25 bp)
AGGATACCTGCAAGGCTGTTGCTGA
LOC_Os03g57090
OsAffx.22655.1.S1_at--572--9111Chr03:32492647..32492671 (25 bp)
TGCTGATCCCTACATCGAGTGCGAG
LOC_Os03g57090
OsAffx.22655.1.S1_at--163--2071NONE
ACTTGACAAGGTTCTGGGCGATGCA
NONE
OsAffx.22655.1.S1_at--181--1071Chr03:32491291..32491315 (25 bp)
AGGGAGGTTCTGTTAGCCGTCATCA
LOC_Os03g57090
OsAffx.22655.1.S1_at--1001--4491Chr03:32491276..32491300 (25 bp)
GCCGTCATCATTTCAAGCTACTTCA
LOC_Os03g57090
OsAffx.22655.1.S1_at--438--4851Chr03:32491260..32491284 (25 bp)
GCTACTTCAAGTTATTTCTCATGGC
LOC_Os03g57090
OsAffx.22655.1.S1_at--1021--8631Chr03:32491141..32491165 (25 bp)
TGGGAGTTTCCGTCATCTGTTATAT
LOC_Os03g57090
OsAffx.22655.1.S1_at--966--5591Chr03:32491108..32491132 (25 bp)
GAAATTTCTGTTCTCTCTTCAAATA
LOC_Os03g57090
OsAffx.22655.1.S1_at--909--7351Chr03:32490347..32490371 (25 bp)
GTGACGGAGTTTTCAAAGGCCCATT
LOC_Os03g57090
OsAffx.22655.1.S1_at--73--2311Chr03:32490333..32490357 (25 bp)
AAAGGCCCATTGCTTCGGAGTCTGC
LOC_Os03g57090
OsAffx.22655.1.S1_at--550--3951Chr03:32490318..32490342 (25 bp)
CGGAGTCTGCTTTGGAGCGCACGCA
LOC_Os03g57090
Target Sequence 
AGGATACCTGCAAGGCTGTTGCTGATCCCTACATCGAGTGCGAGTTCATGATAATCTTGATTGATCTGATTCTACACAAG
ACAAGAGCATATCGTCATCTTCTATTTAATAAGTTGAGGATTTATTCATCACTTGACAAGGTTCTGGGCGATGCATTGTT
AGGGAACATCGTATTTATGACCATGTTATTCCTGGAAGTGCAATTTATCCTAAAACTATCTTTTGATATTAGAAGGTATA
GGGAGGTTCTGTTAGCCGTCATCATTTCAAGCTACTTCAAGTTATTTCTCATGGCAATGATGGTTTGGGAGTTTCCGTCA
TCTGTTATATTCTTTGTTGAAATTTCTGTTCTCTCTTCAAATACTGTAGCACTGAGAGTTGTGACGGAGTTTTCAAAGGC
CCATTGCTTCGGAGTCTGCTTTGGAGCGCACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis