Browse Element(s) Details


Os.7300.1.S1_at

Description gb:AK103474.1
DB_XREF= gi:32988683
TID=Os.7300.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0093E13.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130D12, full insert sequence.
FL= gb:AK103474.1 gb:AK062053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5710011/11Serologically defined breast cancer antigen NY-BR-84, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57070Os.26836.1.S1_a_at11/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57070Os.26836.4.S1_x_at10/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57080OsAffx.13519.1.S1_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57080OsAffx.13519.1.S1_x_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57090OsAffx.22655.1.S1_at10/113+32490276..32493417transmembrane ARV1-like family protein, putative
LOC_Os03g57100Os.7300.1.S1_at11/113+32493480..32499105Serologically defined breast cancer antigen NY-BR-84, putative, expressed
LOC_Os03g57110Os.20638.1.S2_at11/113+32499285..32504041expressed protein
LOC_Os03g57110Os.20638.1.S1_at11/113+32499285..32504041expressed protein
LOC_Os03g57120Os.141.1.S1_at11/113+32505395..32508261Ferredoxin-NADP reductase, root isozyme, chloroplast precursor, putative, expressed
LOC_Os03g57130OsAffx.26384.5.S1_x_at11/113+32508990..32514958Cell differentiation protein rcd1, putative, expressed
LOC_Os03g57140Os.6875.1.S1_at11/113+32520911..32523519expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7300.1.S1_at--461--10611Chr03:32498249..32498273 (25 bp)
TTCTGTCACCGAGTATTTTGTTCCT
LOC_Os03g57100
Os.7300.1.S1_at--1066--10391Chr03:32498264..32498288 (25 bp)
TTTTGTTCCTAAACGCGCTACTGAT
LOC_Os03g57100
Os.7300.1.S1_at--348--8451Chr03:32498372..32498393 (22 bp)
GGCCAGCTGTGTACTTCTTGTATGA
LOC_Os03g57100
Os.7300.1.S1_at--66--5711Chr03:32498456..32498480 (25 bp)
GACTATGTGCAGTTCTTGGCGGTAC
LOC_Os03g57100
Os.7300.1.S1_at--190--3611Chr03:32498470..32498494 (25 bp)
CTTGGCGGTACCTTTGCAATGACAG
LOC_Os03g57100
Os.7300.1.S1_at--857--8751Chr03:32498704..32498728 (25 bp)
TGTACCGGCTTATTGAGTCTGTCAC
LOC_Os03g57100
Os.7300.1.S1_at--1070--9891Chr03:32498749..32498773 (25 bp)
TACTACGGTAATTGCGCATCACATG
LOC_Os03g57100
Os.7300.1.S1_at--897--2611Chr03:32498796..32498820 (25 bp)
AACCCTGTGTGTTGTCACTGGTCAT
LOC_Os03g57100
Os.7300.1.S1_at--811--8831Chr03:32498880..32498904 (25 bp)
TGATATGCTCTATGGCTCGATTGCT
LOC_Os03g57100
Os.7300.1.S1_at--1138--731Chr03:32498943..32498967 (25 bp)
ATGTTAGACTGGCACGGACTCATAA
LOC_Os03g57100
Os.7300.1.S1_at--277--8031Chr03:32498998..32499022 (25 bp)
GGAGGTGCCAACGTCGTGTGATCAT
LOC_Os03g57100
Target Sequence 
TTCTGTCACCGAGTATTTTGTTCCTAAACGCGCTACTGATAGGTCCGCGTGGCCAGCTGTGTACTTCTTGTATGATCTCT
CACCAATTACAGTCACAATCAAAGAAGAAAGAAGGAACTTCCTGCATTTCCTCACCCGACTATGTGCAGTTCTTGGCGGT
ACCTTTGCAATGACAGGAATGCTTGACCGATGGATGTACCGGCTTATTGAGTCTGTCACAAAATCAAAGACCAGAAGCGT
ACTACGGTAATTGCGCATCACATGATAAGTGGAGGCAAACTGTGACAACCCTGTGTGTTGTCACTGGTCATACAAATCAG
TCAGAGCATATCGTCTCAGATACGGTCAACCCCAGTGGGTTTTCATGTTTTGATATGCTCTATGGCTCGATTGCTTAAAA
TACTTATGTTGTTAGCTTTGTCATTAATCACTCATGTTAGACTGGCACGGACTCATAACAGTTTTGTAATCAATGATTCC
CACAAATCGGAGGTGCCAACGTCGTGTGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis