Browse Element(s) Details


Os.19844.1.S1_at

Description gb:AB071806.1
DB_XREF= gi:20975254
TID=Os.19844.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.19844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for transcription factor PCF6, partial cds
DEF=Oryza sativa (japonica cultivar-group) mRNA for transcription factor PCF6, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5719011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57160Os.24550.1.S1_at11/113+32530682..32537963expressed protein
LOC_Os03g57170Os.49156.1.S1_at10/113+32538196..32541150LEM3 family/CDC50 family protein, expressed
LOC_Os03g57180OsAffx.25741.1.S1_at11/113+32542335..32542706hypothetical protein
LOC_Os03g57190Os.19844.1.S1_at11/113+32553330..32557193TCP family transcription factor containing protein, expressed
LOC_Os03g57200Os.12200.1.S1_s_at11/113+32558178..32559224glutathione S-transferase GSTU1, putative, expressed
LOC_Os03g57210Os.9472.1.S1_at11/113+32563547..32566812expressed protein
LOC_Os03g57220Os.12394.1.S1_at10/113+32567478..32571470expressed protein
LOC_Os03g57230OsAffx.3630.1.S1_at10/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.23380.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.20851.1.A1_x_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.5035.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.55580.1.S1_at1/113+32571688..32572681hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19844.1.S1_at--1032--9031Chr03:32554348..32554372 (25 bp)
TGCAGCTGTGGGATGGATTCCGCCA
LOC_Os03g57190
Os.19844.1.S1_at--909--6571Chr03:32554363..32554387 (25 bp)
GATTCCGCCACTCCGGCATGAAGGA
LOC_Os03g57190
Os.19844.1.S1_at--424--5471Chr03:32554397..32554421 (25 bp)
GAACTGATCGATCCCAGCAACGCAT
LOC_Os03g57190
Os.19844.1.S1_at--156--9751Chr03:32556838..32556862 (25 bp)
TAATTGTTGTCACCTTTCCAGCAAG
LOC_Os03g57190
Os.19844.1.S1_at--615--2831Chr03:32556886..32556910 (25 bp)
AAGTTTATTGCGATGACTGCCCGTG
LOC_Os03g57190
Os.19844.1.S1_at--273--4251Chr03:32556906..32556930 (25 bp)
CCGTGTTCTTTTAGCTGGGTCATCG
LOC_Os03g57190
Os.19844.1.S1_at--947--7691Chr03:32556922..32556946 (25 bp)
GGGTCATCGTTCTGCTATGCTGTTT
LOC_Os03g57190
Os.19844.1.S1_at--76--631Chr03:32556938..32556962 (25 bp)
ATGCTGTTTTTTGGCCATCATGAAC
LOC_Os03g57190
Os.19844.1.S1_at--208--5611Chr03:32557001..32557025 (25 bp)
GACAATCTTGTGAATTTCCTTCTTT
LOC_Os03g57190
Os.19844.1.S1_at--774--10391Chr03:32557024..32557048 (25 bp)
TTTTCCTAGATGAAGCTGCTGTACA
LOC_Os03g57190
Os.19844.1.S1_at--1062--2711Chr03:32557078..32557102 (25 bp)
AAGAATAAGCGTGTCCCGTAGCCAG
LOC_Os03g57190
Target Sequence 
TGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGATCGATCCCAGCAACGCATCCTCCA
AAGGAACTGAAGATATCATCATCAGATTAATTGTTGTCACCTTTCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTT
TATTGCGATGACTGCCCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACCCTGCC
GCTGCTGCTACCTGCCATTGCCATCACTCAGACAATCTTGTGAATTTCCTTCTTTTTCCTAGATGAAGCTGCTGTACAAA
TTTTTGTGGGAGACGTGAGTTTCGAACAAGAATAAGCGTGTCCCGTAGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis