Browse Element(s) Details


Os.9472.1.S1_at

Description gb:AK061286.1
DB_XREF= gi:32971304
TID=Os.9472.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033010B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H02, full insert sequence.
FL= gb:AK061286.1 gb:AK073187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5721011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57170Os.49156.1.S1_at10/113+32538196..32541150LEM3 family/CDC50 family protein, expressed
LOC_Os03g57180OsAffx.25741.1.S1_at11/113+32542335..32542706hypothetical protein
LOC_Os03g57190Os.19844.1.S1_at11/113+32553330..32557193TCP family transcription factor containing protein, expressed
LOC_Os03g57200Os.12200.1.S1_s_at11/113+32558178..32559224glutathione S-transferase GSTU1, putative, expressed
LOC_Os03g57210Os.9472.1.S1_at11/113+32563547..32566812expressed protein
LOC_Os03g57220Os.12394.1.S1_at10/113+32567478..32571470expressed protein
LOC_Os03g57230OsAffx.3630.1.S1_at10/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.23380.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.20851.1.A1_x_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.5035.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.55580.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57240Os.52475.1.S1_at10/113+32584630..32585843expressed protein
LOC_Os03g57240Os.52475.1.S1_x_at10/113+32584630..32585843expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9472.1.S1_at--702--6631Chr03:32566135..32566159 (25 bp)
GTTGCTTTCCTTTTTAGCCAGAACA
LOC_Os03g57210
Os.9472.1.S1_at--528--3311Chr03:32566160..32566184 (25 bp)
CACAGGCATTCCACATGTTTATCTC
LOC_Os03g57210
Os.9472.1.S1_at--710--2111Chr03:32566172..32566196 (25 bp)
ACATGTTTATCTCAGCTCTTTTGCA
LOC_Os03g57210
Os.9472.1.S1_at--893--9551Chr03:32566188..32566290 (25 bp)
TCTTTTGCAGCTATGTGATCGGACT
LOC_Os03g57210
Os.9472.1.S1_at--1042--5731Chr03:32566287..32566311 (25 bp)
GACTGGAATGCTTTATGGTGAACTT
LOC_Os03g57210
Os.9472.1.S1_at--1121--2511Chr03:32566307..32566331 (25 bp)
AACTTGCGAGGTTCGTTCTACGCTT
LOC_Os03g57210
Os.9472.1.S1_at--647--4031Chr03:32566320..32566344 (25 bp)
CGTTCTACGCTTGCTTGGGATCAAA
LOC_Os03g57210
Os.9472.1.S1_at--2--7891Chr03:32566365..32566389 (25 bp)
GGTTCAGGGCGCAGAAACTTCTTCG
LOC_Os03g57210
Os.9472.1.S1_at--314--7591Chr03:32566402..32566426 (25 bp)
GGGCATCATTTTGCTGAGGCACCAA
LOC_Os03g57210
Os.9472.1.S1_at--548--5671Chr03:32566555..32566579 (25 bp)
GACATCTGTTCATATGCTATTTGCA
LOC_Os03g57210
Os.9472.1.S1_at--196--9771Chr03:32566629..32566653 (25 bp)
TAATGCTCTTCCCTAGTAACATCTG
LOC_Os03g57210
Target Sequence 
GTTGCTTTCCTTTTTAGCCAGAACACACAGGCATTCCACATGTTTATCTCAGCTCTTTTGCAGCTATGTGATCGGACTGG
AATGCTTTATGGTGAACTTGCGAGGTTCGTTCTACGCTTGCTTGGGATCAAAACAAAAGCAAAGAAGGGTGGGGTTCAGG
GCGCAGAAACTTCTTCGTTTGAAGGTCCAGGGCATCATTTTGCTGAGGCACCAAAAGCTAACAACTCCTGGGACAGTGTC
TGGACTGATGATGGTAGTGGGAAGTAAGGCAATGTTTGTGCAGAGTGAGTGTTTTGTGAGAGAATCATGATGAGTTTGTT
TATGGGGGAGAAATAATCTGTTGACATCTGTTCATATGCTATTTGCATTTGAATGAGAGAGAAAAAAAAGAAGTAATCAC
TAATGCTTTTTGTATGTAATGCTCTTCCCTAGTAACATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis