Browse Element(s) Details


Os.24612.1.A1_at

Description gb:AK065644.1
DB_XREF= gi:32975662
TID=Os.24612.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037C13, full insert sequence.
FL= gb:AK065644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0496010/11phosphoglycerate mutase family protein, expressed
LOC_Os04g451901/11MSP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04930OsAffx.26759.1.S1_x_at1/115+2353102..2354436Transferase family protein
LOC_Os05g04940Os.53203.1.S1_at10/115+2356515..2359852OBP33pep like protein, putative, expressed
LOC_Os05g04950Os.27656.1.S1_at10/115+2360215..2365132expressed protein
LOC_Os05g04960Os.24612.1.A1_at10/115+2378666..2379980phosphoglycerate mutase family protein, expressed
LOC_Os05g04970OsAffx.21897.5.S1_x_at6/115+2384482..2387423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04980NANA5+2387740..2393850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04990OsAffx.26737.1.S1_at11/115+2395295..2396374S-adenosylmethionine decarboxylase proenzyme family protein, expressed
LOC_Os05g05000NANA5+2401920..2408018retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0003824molecular_functioncatalytic activity
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24612.1.A1_at--1050--7691Chr05:2379409..2379433 (25 bp)
GGGTCTTCCTCATGAAGTGGTTCAA
LOC_Os05g04960
Os.24612.1.A1_at--34--10491Chr05:2379429..2379453 (25 bp)
TTCAAGTGGACGGTGGACCAGTTCG
LOC_Os05g04960
Os.24612.1.A1_at--92--1231Chr05:2379448..2379472 (25 bp)
AGTTCGAGCGCCTCAACAACTTCGA
LOC_Os05g04960
Os.24612.1.A1_at--431--2511Chr05:2379465..2379489 (25 bp)
AACTTCGACAACTGCGAGTTCAGGG
LOC_Os05g04960
Os.24612.1.A1_at--381--6071Chr05:2379480..2379504 (25 bp)
GAGTTCAGGGTCATGCAGCTCGGCC
LOC_Os05g04960
Os.24612.1.A1_at--152--211Chr05:2379802..2379826 (25 bp)
ATTTGATTCGATTGGTACTACTAGT
LOC_Os05g04960
Os.24612.1.A1_at--176--2032Chr05:2379818..2379842 (25 bp)
ACTACTAGTGTATTTCTCCATTGGG
LOC_Os05g04960
Os.24612.1.A1_at--208--4312Chr05:2379860..2379884 (25 bp)
CCTTTGCTGATTCTTTTCTGTTTGA
LOC_Os05g04960
Os.24612.1.A1_at--188--10311Chr05:2379874..2379898 (25 bp)
TTTCTGTTTGATCTGTAGCCTGTTC
LOC_Os05g04960
Os.24612.1.A1_at--943--4471Chr05:2379891..2379915 (25 bp)
GCCTGTTCATACATAGTTGCTAGAT
LOC_Os05g04960
Os.24612.1.A1_at--994--5691NONE
GACTATCAAAAGGATTCTTTGCCTA
NONE
Target Sequence 
GGGTCTTCCTCATGAAGTGGTTCAAGTGGACGGTGGACCAGTTCGAGCGCCTCAACAACTTCGACAACTGCGAGTTCAGG
GTCATGCAGCTCGGCCCCGCCGGNGAGTACAGCCTCCTCATCCACCACACCAAGGAGGAGCTCCAGCGCTGGGGCCTCTC
CCCGGAGATGATCNCCGACCAGCAGTGGCGCGCCTCCGCCAACCGCCGCAGNTGGGCCGACGAGTGCTCCTCCTTCCTCG
CCACCNTNTTCGACCACTGGAACGAAGACGACAATGACGACGACGNCGATGGCAAGGAGGAAAATGGCAAGACCANCAAG
TTGCTCGNGTAATAATCTTGCTGCTTGCCTNTACTTGCNCTTTCTTTAGAAATTCCGTTTAAAATTCTTTGGAATTTGAT
TCGATTGGTACTACTAGTGTATTTCTCCATTGGGGCGATGCAATGTANTCCCCTTTGCTGATTCTTTTCTGTTTGATCTG
TAGCCTGTTCATACATAGTTGCTAGATACTACATTGATAAATACTATATATGATTTGGGGAAATGAAGCAAACGTTTTGA
CTATCAAAAGGATTCTTTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24612.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis