Browse Element(s) Details


Os.27656.1.S1_at

Description gb:AK064405.1
DB_XREF= gi:32974423
TID=Os.27656.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H08, full insert sequence.
FL= gb:AK064405.1 gb:AK103601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0495010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04900OsAffx.14548.1.S1_at11/115+2338226..2338670hypothetical protein
LOC_Os05g04914OsAffx.14549.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.26736.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.15178.1.S1_s_at1/115+2341759..2349840expressed protein
LOC_Os05g04930OsAffx.26759.1.S1_x_at1/115+2353102..2354436Transferase family protein
LOC_Os05g04940Os.53203.1.S1_at10/115+2356515..2359852OBP33pep like protein, putative, expressed
LOC_Os05g04950Os.27656.1.S1_at10/115+2360215..2365132expressed protein
LOC_Os05g04960Os.24612.1.A1_at10/115+2378666..2379980phosphoglycerate mutase family protein, expressed
LOC_Os05g04970OsAffx.21897.5.S1_x_at6/115+2384482..2387423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04980NANA5+2387740..2393850retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27656.1.S1_at--449--2091Chr05:2360782..2360806 (25 bp)
ACATACAGCGTGACCGGGAGTGCGT
LOC_Os05g04950
Os.27656.1.S1_at--426--3371Chr05:2360711..2360735 (25 bp)
CACCAGGTGGTCTGCGCGAAATGCA
LOC_Os05g04950
Os.27656.1.S1_at--477--4571Chr05:2360698..2360722 (25 bp)
GCGCGAAATGCAATGACCTCCATGA
LOC_Os05g04950
Os.27656.1.S1_at--865--5831Chr05:2360684..2360708 (25 bp)
GACCTCCATGACAAGCAAGGGATGA
LOC_Os05g04950
Os.27656.1.S1_at--412--4171Chr05:2360612..2360636 (25 bp)
CGCCTCGCCGGTTGCTAGACTTCTT
LOC_Os05g04950
Os.27656.1.S1_at--671--331Chr05:2360455..2360479 (25 bp)
ATACATGGTTGGTCGCACATCAATC
LOC_Os05g04950
Os.27656.1.S1_at--333--5111Chr05:2360441..2360465 (25 bp)
GCACATCAATCAAAACCCCGCAGAG
LOC_Os05g04950
Os.27656.1.S1_at--374--10371Chr05:2360335..2360359 (25 bp)
TTTTTTCGCTGAGCATTGCAGGCAA
LOC_Os05g04950
Os.27656.1.S1_at--1021--4931Chr05:2360323..2360347 (25 bp)
GCATTGCAGGCAATCAGAACTAGTT
LOC_Os05g04950
Os.27656.1.S1_at--808--5911Chr05:2360252..2360276 (25 bp)
GAGCTATTCCATTTATCCTGGAATC
LOC_Os05g04950
Os.27656.1.S1_at--760--1011NONE
AGGTTTCGGTTCATGGCTGATGTTA
NONE
Target Sequence 
ACATACAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTG
GTCTGCGCGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCNTCGTGCCGGACCCCCATCCAGCGCAG
GGTGTGCGCCCGCCTCGCCGGTTGCTAGACTTCTTCNNNATATACACCATTTTGTTTTCTCTTTTTATTTGTTTTTTTTG
ATTGATTTGCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTT
TGAGAATAATATACATGGTTGGTCGCACATCAATCAAAACCCCGCAGAGATAATGGATAATGGGATGGGTGTTGGTTATA
CATGATGTACAGAGCGTTGTCTTNTGAATGCTTTTCCTTTNGGTTTATCTTTTTTTCGCTGAGCATTGCAGGCAATCAGA
ACTAGTTNTTGTCAGGTAAGAGTATCAAAANGTGTTTGAATTTTGATGCTTNTGAGCTATTCCATTTATCCTGGAATCCT
CNCNGAANNGAGGTTTCGGTTCATGGCTGATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis